View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_38 (Length: 249)
Name: NF4501_low_38
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_38 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 39871968 - 39872205
Alignment:
| Q |
10 |
agatgaactatagaacaaatcaatgttttgggagaaaagtagttgttaacctttagaaaggaaacattatggaaaaatatatgttaggatgccttgcttg |
109 |
Q |
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| T |
39871968 |
agatgagctatagaacaaatcaatgttttgggagaaaagtagttgttaaccttcagaaaggaaacattatggaaaaatatatgttaggatgccttgcttg |
39872067 |
T |
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| Q |
110 |
agcattttcaaactttcttcagcttccccctcttttttgggtgatccagatgtaatttagattgttatcagagttagctcactgcaaaatggcaaaaagc |
209 |
Q |
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| T |
39872068 |
agcattttcaaactttcttcagcttccccctcttttttgggtgatccagatgtaatttagattgttatcagagttagctcactgcaaaatggcaaaaagc |
39872167 |
T |
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| Q |
210 |
ttaagcagtgataaaccggttcattagttaatatttttcc |
249 |
Q |
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| T |
39872168 |
ttaagcagtgataaaccgg--cactggttaatatttttcc |
39872205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 43837017 - 43837253
Alignment:
| Q |
10 |
agatgaactatagaacaaatcaatgttttgggagaaaagtagttgttaacctttagaaaggaaacattatggaaaaatatatgttaggatgccttgcttg |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
43837017 |
agatgagctatagaacaaatcaatgttttgggagaaaagtagtt---aacctttagaaaggaaacattatggaaaaatatatatcaggatgccttgcttg |
43837113 |
T |
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| Q |
110 |
agcattttcaaactttcttcagcttccccctcttttttgggtgatccagatgtaatttagattgttatcagagttagctcactgcaaaatggcaaaaagc |
209 |
Q |
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| T |
43837114 |
agcattttcaaacattcttccgtgtccccctcttttttgggtgattcagatgtaatttagattgttatcagagtttgctcactgcaaaatggcaaaaagc |
43837213 |
T |
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| Q |
210 |
ttaagcagtgataaaccggttcattagttaatatttttcc |
249 |
Q |
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| T |
43837214 |
ttgagcagtgatgaaccggtgcactggttaacatttttcc |
43837253 |
T |
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