View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_39 (Length: 246)
Name: NF4501_low_39
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1157972 - 1157737
Alignment:
| Q |
1 |
ctaaatgttaggtataacttgaggggctgtgttcaactaaagtaaaaccttttaaaataggaaatgtaacaaaatctacaatctaatgtaaattaaaatg |
100 |
Q |
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| T |
1157972 |
ctaaatgttaggtataacttgaggggctgtgttcaactaaagtaaaaccttttaaaatcggaaatgtaacaaaatctacaatctaatgtaaattaaaatg |
1157873 |
T |
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| Q |
101 |
gatgattttgtgggttgtctcttccttttggggcactaggaacacagtggatgcagttggacataatgcatgtatccacttattgcaaaggattgttggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1157872 |
gatgattttgtgggttgtctcttccttttggggcactaggaacacagtggatgcagttggacataatgcatgtatccacttattgcaaaggattgttggc |
1157773 |
T |
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| Q |
201 |
aatccacttcttatggcaccccactacgtacctttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1157772 |
aatccacttcttatggcaccccactacgtacctttg |
1157737 |
T |
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