View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_4 (Length: 670)
Name: NF4501_low_4
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 38122058 - 38121547
Alignment:
| Q |
16 |
aatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagagagaataggaatggtaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38122058 |
aatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagagagaataggactggtaa |
38121959 |
T |
|
| Q |
116 |
ttaatgtttctgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttgcatca |
215 |
Q |
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| T |
38121958 |
t----gtttctgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgcaccgttgcatca |
38121863 |
T |
|
| Q |
216 |
agggataagactagatgccttagtttccacaatgttggatctacatttttaaaggagataagaataatttggtggctgaggtggaggagtgaggagtgca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
38121862 |
agggataagactagatgccttagtttccacaatgttggatccacatttttaaaggagataagaataatttggtggctgacatggaagagtgaggagtgca |
38121763 |
T |
|
| Q |
316 |
atgttcgaactccaccttcaacaaaaactaacaatattaacatttattgttttaagaaaacagtgatatatgtaattacattcnnnnnnnnctccgttca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38121762 |
atgttcgaactccaccttcaacaaaaactaacaatactaacatttattgttttaagaaaacagtgatatatgtaattacattc-tttttttctccgttca |
38121664 |
T |
|
| Q |
416 |
accaaatcaaacacattcatcccaaatatacatctacatgcatcaagatgaaacggcactcttataaaaaggaggagaatagttcaagtatttatagtat |
515 |
Q |
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| T |
38121663 |
accaaatcaaacacattcatcccaaatatacatctacatgcatcaagatgaaacggcactcttataaaaaggaggagaatagttcaaatatttatagaat |
38121564 |
T |
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| Q |
516 |
aataactataaaatgta |
532 |
Q |
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||||||||||||||||| |
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| T |
38121563 |
aataactataaaatgta |
38121547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 530 - 594
Target Start/End: Complemental strand, 38121252 - 38121188
Alignment:
| Q |
530 |
gtaagtaagaaaattgagataaacaaggtgtctcacataagagtctatattttgatgttcaaata |
594 |
Q |
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| T |
38121252 |
gtaagtaagaaaattgagataaacaaggtgtctcacataagagtctatattttgattttcaaata |
38121188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 4620919 - 4620836
Alignment:
| Q |
16 |
aatacctcaattggcttttgcttctaaggatcactaagcctctcagctccacaagtcaataacggtttcactgttgaaatagag |
99 |
Q |
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| T |
4620919 |
aatacctcaattggattttgcatctaaggatcaataaacctctcagctccacaagtcaataactgtttcactgttgcaatagag |
4620836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 4620774 - 4620699
Alignment:
| Q |
126 |
tgaatccaaattttccactaattaggtttgaacattgaagttcaaattaaagcttgattcaaaatcaatggaagttgca |
204 |
Q |
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||||||||||| |||||| || ||||||||| ||||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4620774 |
tgaatccaaatcttccaccaa---ggtttgaactttgaagttccaattaaagctcaattcaaaatcaatgaaagttgca |
4620699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 661
Target Start/End: Original strand, 3275208 - 3275275
Alignment:
| Q |
594 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
661 |
Q |
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| T |
3275208 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
3275275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 661
Target Start/End: Original strand, 3279784 - 3279851
Alignment:
| Q |
594 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
661 |
Q |
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| T |
3279784 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
3279851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 661
Target Start/End: Complemental strand, 28596966 - 28596899
Alignment:
| Q |
594 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28596966 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
28596899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 594 - 661
Target Start/End: Complemental strand, 28601544 - 28601477
Alignment:
| Q |
594 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601544 |
agtttgatttcagaagaatattttttctctgattgatatatgttttattgaacatgtacaagaattat |
28601477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 634
Target Start/End: Complemental strand, 24395289 - 24395249
Alignment:
| Q |
594 |
agtttgatttcagaagaatattttttctctgattgatatat |
634 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
24395289 |
agtttgatttgagaagaatattttttctctgattgatatat |
24395249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 661
Target Start/End: Original strand, 297931 - 297997
Alignment:
| Q |
594 |
agtttgatttcagaagaata-ttttttctctgattgatatatgttttattgaacatgtacaagaattat |
661 |
Q |
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|||||||||| ||||||||| ||||||||||||||| |||| ||| |||||||||||||||| ||||| |
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| T |
297931 |
agtttgatttgagaagaatatttttttctctgattg--atatttttcattgaacatgtacaaggattat |
297997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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