View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_42 (Length: 238)

Name: NF4501_low_42
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_42
NF4501_low_42
[»] chr2 (2 HSPs)
chr2 (18-216)||(29066831-29067029)
chr2 (28-63)||(29074142-29074177)
[»] chr7 (3 HSPs)
chr7 (18-198)||(13915943-13916123)
chr7 (63-206)||(17320772-17320915)
chr7 (28-62)||(13921403-13921437)
[»] chr5 (3 HSPs)
chr5 (60-195)||(22283059-22283194)
chr5 (65-122)||(22262635-22262693)
chr5 (117-159)||(22262813-22262855)
[»] scaffold0031 (1 HSPs)
scaffold0031 (63-206)||(84821-84964)
[»] chr4 (2 HSPs)
chr4 (111-216)||(15777705-15777810)
chr4 (61-122)||(15777925-15777986)
[»] chr6 (3 HSPs)
chr6 (74-206)||(24021669-24021801)
chr6 (65-113)||(24033091-24033140)
chr6 (117-159)||(24032912-24032954)
[»] scaffold0268 (2 HSPs)
scaffold0268 (65-122)||(8950-9008)
scaffold0268 (31-59)||(15531-15559)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 29066831 - 29067029
Alignment:
Q  18 gtaagaaccttaactttaatatcaattgaagaacaatgcctgattataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctat 117  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29066831 gtaagaaccttaactttaatcttaattgaaggacaatgcctgattataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctat 29066930  T
Q  118 aaatagtttcaatcacacattttgagacttgagtggaagaaaataccctagcaaaaatacgttcttactaaactctatcagcaatactctgtcaaaaac 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29066931 aaatagtttcaatcacaccttttgagacttgagtggaagaaaatactcgagcaaaaatacgttctttctaaactctatcagcaatactctgtcaaaaac 29067029  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 29074142 - 29074177
Alignment:
Q  28 taactttaatatcaattgaagaacaatgcctgatta 63  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29074142 taactttaatatcaattgaaggacaatgcctgatta 29074177  T

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Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 13915943 - 13916123
Alignment:
Q  18 gtaagaaccttaactttaatatcaattgaagaacaatgcctgattataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctat 117  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13915943 gtaagaaccttaactttaatatcaattgaaggacaatgcccgattataatgtcatgatttattaatgtcattttggaaaatattagcaccatatttctat 13916042  T
Q  118 aaatagtttcaatcacacattttgagacttgagtggaagaaaataccctagcaaaaatacgttcttactaaactctatcag 198  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||    
T  13916043 aaatagtttcaatcacaccttttgagacttgagtggaagaaaatactctaccaaaaatacgttgtttctaaactctatcag 13916123  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 17320915 - 17320772
Alignment:
Q  63 ataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctataaatagtttcaatcacacattttgagacttgagtggaagaaaata 162  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||| ||||||||||||||    
T  17320915 ataaagtcatgatttatttatgtcattttggaaaatattagcacaatatttctataaatagtttcaatcacatcctttgagactttagtggaagaaaata 17320816  T
Q  163 ccctagcaaaaatacgttcttactaaactctatcagcaatactc 206  Q
    | ||||| ||||||| ||||  ||||||||||| |||| |||||    
T  17320815 ctctagccaaaatactttctctctaaactctataagcagtactc 17320772  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 13921403 - 13921437
Alignment:
Q  28 taactttaatatcaattgaagaacaatgcctgatt 62  Q
    ||||||||||||||||||||| |||||||||||||    
T  13921403 taactttaatatcaattgaaggacaatgcctgatt 13921437  T

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Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 22283059 - 22283194
Alignment:
Q  60 attataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctataaatagtttcaatcacacattttgagacttgagtggaagaaa 159  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  22283059 attataaagtcatgatttatttatgtcattttggaaaatattagcacaatatttctataaatagtttcaatcacaccctttgagactttagtggaagaaa 22283158  T
Q  160 ataccctagcaaaaatacgttcttactaaactctat 195  Q
    |||| ||||| ||||||| ||||  |||||||||||    
T  22283159 atactctagccaaaatactttctctctaaactctat 22283194  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 22262635 - 22262693
Alignment:
Q  65 aatgtcatgatttatttatgtcatttt-ggaaaatattagcaccatatttctataaata 122  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  22262635 aatgtcatgatttatttatgtaatttttggaaaatattagcaccatatttatttaaata 22262693  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 22262813 - 22262855
Alignment:
Q  117 taaatagtttcaatcacacattttgagacttgagtggaagaaa 159  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  22262813 taaatagtttcaatcacaccttttgagacttgagtgtaagaaa 22262855  T

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Target: scaffold0031 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 84821 - 84964
Alignment:
Q  63 ataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctataaatagtttcaatcacacattttgagacttgagtggaagaaaata 162  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||| ||||||||||||||    
T  84821 ataaagtcatgatttatttatgtcattttggaaaatattagcacaatatttctataattagtttcaatcacaccctttgagactttagtggaagaaaata 84920  T
Q  163 ccctagcaaaaatacgttcttactaaactctatcagcaatactc 206  Q
    | ||||| ||||||| ||||  ||||||||||| |||| |||||    
T  84921 ctctagccaaaatactttctctctaaactctataagcattactc 84964  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 15777810 - 15777705
Alignment:
Q  111 tttctataaatagtttcaatcacacattttgagacttgagtggaagaaaataccctagcaaaaatacgttcttactaaactctatcagcaatactctgtc 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||    
T  15777810 tttctataaatagtttcaatcacaccttttgagacttgagtggaagaaaatactctagcaaaaatacgttctttctaaactctatcagcaatacactgtc 15777711  T
Q  211 aaaaac 216  Q
    ||||||    
T  15777710 aaaaac 15777705  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 15777986 - 15777925
Alignment:
Q  61 ttataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttctataaata 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  15777986 ttataatgtcatgatttatttatgtcattttggaaaatattagcaccatatttatttaaata 15777925  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 24021801 - 24021669
Alignment:
Q  74 atttatttatgtcattttggaaaatattagcaccatatttctataaatagtttcaatcacacattttgagacttgagtggaagaaaataccctagcaaaa 173  Q
    |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| ||| | |||    
T  24021801 atttatttatgtcattttggaaaatagtagtacaatatttctataaatagtttcaatcacaccctttgagactttagtggaagaaaatactctacccaaa 24021702  T
Q  174 atacgttcttactaaactctatcagcaatactc 206  Q
    |||| ||||  ||||||||||| |||| |||||    
T  24021701 atactttctctctaaactctataagcagtactc 24021669  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 24033140 - 24033091
Alignment:
Q  65 aatgtcatgatttatttatgtcatttt-ggaaaatattagcaccatattt 113  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  24033140 aatgtcatgatttatttatgtaatttttggaaaatattagcaccatattt 24033091  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 24032954 - 24032912
Alignment:
Q  117 taaatagtttcaatcacacattttgagacttgagtggaagaaa 159  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  24032954 taaatagtttcaatcacaccttttgagacttgagtgtaagaaa 24032912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 8950 - 9008
Alignment:
Q  65 aatgtcatgatttatttatgtca-ttttggaaaatattagcaccatatttctataaata 122  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||| | ||||||    
T  8950 aatgtcatgatttatttatgtaatttttgaaaaatattagcaccatatttatttaaata 9008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 15531 - 15559
Alignment:
Q  31 ctttaatatcaattgaagaacaatgcctg 59  Q
    |||||||||||||||||||||||||||||    
T  15531 ctttaatatcaattgaagaacaatgcctg 15559  T

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