View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_46 (Length: 228)

Name: NF4501_low_46
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_46
NF4501_low_46
[»] chr5 (6 HSPs)
chr5 (42-119)||(37440376-37440453)
chr5 (19-115)||(37226771-37226867)
chr5 (42-115)||(37221321-37221394)
chr5 (49-116)||(37387066-37387133)
chr5 (121-194)||(37326374-37326448)
chr5 (42-92)||(37195845-37195895)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 37440376 - 37440453
Alignment:
Q  42 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttcagcc 119  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37440376 aagagtgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacgtttctgtacgagcttcagcc 37440453  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 37226771 - 37226867
Alignment:
Q  19 gttgatagtgtcgaagcctctcaaagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttc 115  Q
    |||||||||||| ||| || |  |||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  37226771 gttgatagtgtccaagtctatacaagattgaatgttccattcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc 37226867  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 37221321 - 37221394
Alignment:
Q  42 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttc 115  Q
    |||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  37221321 aagagtgaatgttcccttcccttgtgattgcatcaatgatgagtttcttggtcacacatttctctacaagcttc 37221394  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 37387133 - 37387066
Alignment:
Q  49 aatgtttcattcccttgtgattgcatcaatgatgagattcttggtcacacgtttctgtacgagcttca 116  Q
    |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||    
T  37387133 aatgttccattcccttgtgattgcattaatgacgagtttcttggtcacacgtttttgtacgagtttca 37387066  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 37326448 - 37326374
Alignment:
Q  121 attcaggttgaaattcataagacatttttcaaatcaattcgaatctt-ctatgaatagtaaaatgattaccaata 194  Q
    |||||||||| || ||||||||||||||| |||||||||  |||||| ||||||||  |||||||||||||||||    
T  37326448 attcaggttgtaactcataagacattttttaaatcaatttaaatcttactatgaatcataaaatgattaccaata 37326374  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 37195845 - 37195895
Alignment:
Q  42 aagagtaaatgtttcattcccttgtgattgcatcaatgatgagattcttgg 92  Q
    |||||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  37195845 aagagtgaatgttccattcccttgtgattgcatccatgatgagtttcttgg 37195895  T

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