View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_48 (Length: 224)
Name: NF4501_low_48
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_48 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 39872425 - 39872208
Alignment:
| Q |
7 |
ataaaatgagatagagaaataggtatnnnnnnntaggactctttttggaattgagattatgtaatatacctaaaaatggaaccatccattataaaaggtt |
106 |
Q |
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| T |
39872425 |
ataaaatgagatagagaaataggtataaaaaaataggactctttttggaattgagattatgtaatatacctaaaaatggaaccatccattataaaaggtt |
39872326 |
T |
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| Q |
107 |
acgtgccttnnnnnnncgatatgcatgacattgcaacagcttatttagttgttgactgttgagacaagagaaatcattatcagtacatacaagtacagtg |
206 |
Q |
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| T |
39872325 |
acgtgccttaaaaaaacgatatgcatgacattgcaacagcttatttagttgttgactgttgagacaagagaaatcattatcagtacatacaagtacagtg |
39872226 |
T |
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| Q |
207 |
gttttctatgagatttga |
224 |
Q |
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| T |
39872225 |
gttttctatgagatttga |
39872208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 43837502 - 43837456
Alignment:
| Q |
68 |
taatatacctaaaaatggaaccatccattataaaaggttacgtgcctt |
115 |
Q |
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| T |
43837502 |
taatatacctaaaaatggaaccatccattatagaa-gttacgtgcctt |
43837456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 43837339 - 43837310
Alignment:
| Q |
177 |
aaatcattatcagtacatacaagtacagtg |
206 |
Q |
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| T |
43837339 |
aaatcattatcagtacatacaagtacagtg |
43837310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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