View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_49 (Length: 224)

Name: NF4501_low_49
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_49
NF4501_low_49
[»] chr7 (6 HSPs)
chr7 (23-224)||(29934728-29934929)
chr7 (61-224)||(30056191-30056354)
chr7 (54-224)||(30072704-30072874)
chr7 (60-224)||(29729790-29729954)
chr7 (60-222)||(29733126-29733288)
chr7 (177-224)||(29746939-29746986)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 29934728 - 29934929
Alignment:
Q  23 gaaagaacgtgatcttagaaacatggtaatcggtcatattgggtatgaagcatccatcgcaatgccgcataaaccttcttttgcatctatgtctcgcttc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||  ||||| |||||||||||||||||||||    
T  29934728 gaaagaacgtgatcttagaaacatggtaatcggtcatattgggtaaaaagcattcattgcaatgccacataggccttcctttgcatctatgtctcgcttc 29934827  T
Q  123 atccttatatatcctttctctccccatgaagttccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgtta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29934828 atccttatatatcctttctctccccatgaagttccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgtta 29934927  T
Q  223 ca 224  Q
    ||    
T  29934928 ca 29934929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 30056191 - 30056354
Alignment:
Q  61 ttgggtatgaagcatccatcgcaatgccgcataaaccttcttttgcatctatgtctcgcttcatccttatatatcctttctctccccatgaagttcccca 160  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||  | | |||||    
T  30056191 ttgggtaagaagcatccatcggaatgccgcataaaccttcttttgcatctatgtctcgcttcattcttatatatctcttctctccccatctaatgcccca 30056290  T
Q  161 tgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgttaca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30056291 tgaattctttactaaccaatatttagtaccgtcattcgatgtaccataaccaactattattaca 30056354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 30072704 - 30072874
Alignment:
Q  54 ggtcatattgggtatgaagcatccatcgcaatgccgcataaaccttcttttgcatctatgtctcgcttcatccttatatatcctttctctccccatgaag 153  Q
    ||||| |||||| | ||||| |||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||| |||||| ||||||        
T  30072704 ggtcagattgggcaagaagcctccatcgcaatgccgcataagccttcctttgcatctatgtcgtgcttcatccttatatatcatttctcaccccatctga 30072803  T
Q  154 ttccccatgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgttaca 224  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  30072804 tgccccatgaattctttactaaccagtatttagtaccgtcattcgatgtaccataaccaactattgttaca 30072874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 29729790 - 29729954
Alignment:
Q  60 attgggtatgaagcatccatcgcaatgccgcataaaccttcttttgcatctatgtctcgcttcatccttatatatcctttctctccccatgaagttcccc 159  Q
    |||||||| ||||  | ||| |||||||| ||||  ||||| |||||||||||||||||||| ||||||||||| || ||||||||||||    | | ||    
T  29729790 attgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatataacccttctctccccatcttttactcc 29729889  T
Q  160 atgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgttaca 224  Q
    |||| || || ||||||||||||||| |||| || || ||||||||||| |||||||||||||||    
T  29729890 atgagtttttcactaaccaatatttaataccatcttttgatgtaccataaccaactattgttaca 29729954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 29733126 - 29733288
Alignment:
Q  60 attgggtatgaagcatccatcgcaatgccgcataaaccttcttttgcatctatgtctcgcttcatccttatatatcctttctctccccatgaagttcccc 159  Q
    |||||||| ||||  | ||| |||||||| ||||  ||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||    | | ||    
T  29733126 attgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatatctcgcttaatccttatataacccttctctccccatcttttactcc 29733225  T
Q  160 atgaattctttactaaccaatatttagtaccgtcattcgatgtaccatagccaactattgtta 222  Q
    |||| || || ||||||||||||||  |||| || || ||||||||||| |||||||| ||||    
T  29733226 atgagtttttcactaaccaatatttgataccatcttttgatgtaccataaccaactatggtta 29733288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 29746986 - 29746939
Alignment:
Q  177 caatatttagtaccgtcattcgatgtaccatagccaactattgttaca 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29746986 caatatttagtacagtcattcgatgtaccatagccaactattgttaca 29746939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University