View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_6 (Length: 644)
Name: NF4501_low_6
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 34 - 628
Target Start/End: Complemental strand, 31420563 - 31419969
Alignment:
| Q |
34 |
atttatttgacatgttaacggctctactttgagacaaaacagtgcagtgttaataatgcagggccggtttagtcaatacagttccctctgaaaaatgttt |
133 |
Q |
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| T |
31420563 |
atttatttgacatgttaacggctctactttgagacaaaacagtgcagcgttaataatgcagggccggtttagtcaatacagttccctctgaaaaatgttt |
31420464 |
T |
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| Q |
134 |
gaatgacgcagattgcctgagactaggggtacatatttttcctaaattaaccctaaactcatttcctcctggacaggtttttggccgaaattatagtttc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31420463 |
gaatgacgcagattgcctgagactaggggtacatatttttcctaaattaaccctaaactcatttcctcctggacaggtttttggccgaaattatagtttc |
31420364 |
T |
|
| Q |
234 |
tgttgtactacagtgagggtattctcgtcaatacaaagccaccctcaacatctcacccaaaaaccgaaaaaagttttggattttccatcatacccatggc |
333 |
Q |
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| T |
31420363 |
tgttgtactacagtgagggtattctcgtcaatacaaagccaccctcaacatctcacccaaaaaccgaaaaaagttttggattttccatcatacccatgcc |
31420264 |
T |
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| Q |
334 |
cccatcgtgaatcaattttccaaagcgtccgcatcacgaggctcttgcaaaaggataaggtcactttcgtcatttcaaaaatcaacccaacaccaccgta |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31420263 |
cccatcgtgaatcaattttccaaagcgtccgcatcacgaggctcttgcaaaaggataaggtcactttcgtcatttcaaaaatcaacccaacaccaccgta |
31420164 |
T |
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| Q |
434 |
acgtggcatcgtgagccgatacctgaaactaaaacccggttcagacctcaacacgtaacgtactcaggttctcacgactcgccgcgtaggatttacacgt |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31420163 |
acgtggcatcgtgagccgatacctgaaactaaaacccggttcagacctcaacacgtaacgtactcaggttctcacgactcgccgcgtaggatttacacgt |
31420064 |
T |
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| Q |
534 |
ggcagttcatacttacgtcattgcattttcctctttctctttaaataatccgcactttcttaaccgctccttatctatcctctcctcgatcattg |
628 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31420063 |
ggcagttcatacttacgtcattgcattttcctctttctctttaaataatccgcactttcttaaccgctccttatctatcctctcctcgatcattg |
31419969 |
T |
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