View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_8 (Length: 569)
Name: NF4501_low_8
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 38185486 - 38185737
Alignment:
| Q |
18 |
caaactctatgtggtact-atgtataattggtggtatagaagtgatttggatattatctttttaacattattttttctaacgcccattattttatggaaa |
116 |
Q |
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| T |
38185486 |
caaactctatgtgatactcatgtataattggtggtatagaagtgatttggatattatttttttaacattattttttttaacgcccattattttatggaaa |
38185585 |
T |
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| Q |
117 |
ctcaaatgtgtcccacgtgtttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataaaagaccgtgtgttgtagaaaatattta |
216 |
Q |
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| T |
38185586 |
ctcaaatgtgtcccacgtttttgaaatagatcacatatgaaatgatgaaatccacgtgagtttgatacaataaaagaccgtgtgttgtagaaaatattta |
38185685 |
T |
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| Q |
217 |
aaagaaagagtttttaacttttctctgatgtctaatggtgtaaatttatttt |
268 |
Q |
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| T |
38185686 |
aaagaaagagtttttaacatttctctaatgtctaatggtgtaaatttatttt |
38185737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 266 - 551
Target Start/End: Original strand, 38186578 - 38186878
Alignment:
| Q |
266 |
tttatttttaaggatttcagcttaggatgattgtaatcttgtactaaattcttatggtgagtttaatttggttggatacatgcacaaccaaaagtcatac |
365 |
Q |
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| T |
38186578 |
tttatttttaaggatttcagcttaggatgattgtaatcttgtactaaattcttatggtgagttt-----gggttgatacatgcacaaccaaaagtcatac |
38186672 |
T |
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| Q |
366 |
aaaatttgattttgtttataaataaacgcaatcaaattttagcttatcaagtt---------------------cgacactataatgtattataaaatat |
444 |
Q |
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| T |
38186673 |
aaaatttgattttgtttataaataaacgcaaccaaattttagcttatcaagttcgaccggctacatgaattaaacgacactataatgtattataaaaaat |
38186772 |
T |
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| Q |
445 |
cgtgtctttctttaacccatttatttcttgatccctgctaatagtttctcttataatctttttacatatactcctacatttggtgttctgactctcctcc |
544 |
Q |
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| T |
38186773 |
tgtgtctttctttaacccattattttcttgat-cttgctaatagtttctcttataatctttttacatatactcctacatttggtgttctgactttcctcc |
38186871 |
T |
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| Q |
545 |
agatgat |
551 |
Q |
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| T |
38186872 |
atatgat |
38186878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 38180925 - 38180974
Alignment:
| Q |
462 |
catttatttcttgatccctgctaatagtttctcttataatctttttacat |
511 |
Q |
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| T |
38180925 |
catttatctcttgatccttgttaatagtttttcttagaatctttttacat |
38180974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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