View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_9 (Length: 565)
Name: NF4501_low_9
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 162 - 565
Target Start/End: Original strand, 43294902 - 43295299
Alignment:
| Q |
162 |
aatgtaaaggtgcaataactgcaattgcaaagatgactttcgctgcaaatnnnnnnn-tgaacactatagataacctttagtcctttacaacatacaatt |
260 |
Q |
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| T |
43294902 |
aatgtaaaggtgcaataactgcaa------agatgactttcgctgcaaataaaaaaaatgaacactatagataacctttagtccttt-caacatacaatt |
43294994 |
T |
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| Q |
261 |
ttgtttatataaaaatcattacgatagagatgacttttatgagtttatcagttcatggtgaacnnnnnnntattaaccataaaggcaacctttactgttg |
360 |
Q |
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| T |
43294995 |
ttgtttatataaaaatcattacgatagagatgacttttatgagtttatcagttcatggtgaacaaaaaa-tattaaccataaaggcaacctttactgttg |
43295093 |
T |
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| Q |
361 |
ccactgtga-gatagatgttacggcgaagaaaaatataaaccataaaaatgacttttatgatattgcaaggaagttgaaataatatttcttttgtnnnnn |
459 |
Q |
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| T |
43295094 |
ccactgtgaagataaatgttacggcgaagaaaaatataaaccataaaaatgacttttaagatactgcaaggaagttgaaataatatttcttttgtaaaaa |
43295193 |
T |
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| Q |
460 |
nnctcaaagaacaagatttttcaaatgaagtattctcgtttaatcttgcacgaagatttcaatgcttttcgacatttcttgataattgacgctccttact |
559 |
Q |
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| T |
43295194 |
aactcaaagaacaagatttttcaaatgaagtattctcgtttaatcttgcacgaagatttcgatgcttttcgacatttcttgagaattgacgctccttgtt |
43295293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43294745 - 43294863
Alignment:
| Q |
1 |
ccccacttgctattgggtcatgcatgcacgttgtggcatggtaatgcttgaaaattgttaagtgtaccccatacaatcttttattacccaagagtcttta |
100 |
Q |
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| T |
43294745 |
ccccacttgctattgggtcatgcatg----ttgtggcatggtaatgcttgaaaattgttaagtgtacccccaacaatcttttattacccaacagtcttta |
43294840 |
T |
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| Q |
101 |
cttgtcaaaatactcctatcaaa |
123 |
Q |
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| T |
43294841 |
cttgtcaaaatactcctatcaaa |
43294863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 243 - 422
Target Start/End: Complemental strand, 22435825 - 22435654
Alignment:
| Q |
243 |
cctttacaacatacaattttgtttatataaaaatcattacgatagagatgacttttatgagtttatcagttcatggtgaacnnnnnnntattaaccataa |
342 |
Q |
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| T |
22435825 |
cctttacaacatacaattttgtctatataaaaatcattaccataaagatgacttttaacagtttat--------ggtgaacgaaaaa-tatgaaccataa |
22435735 |
T |
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| Q |
343 |
aggcaacctttactgttgccactgtga-gatagatgttacggcgaagaaaaatataaaccataaaaatgacttttatgata |
422 |
Q |
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| T |
22435734 |
aggcaacctttattgttgccactgtgaagataaattttaaggtgaagaaaaatataaaccataaaaatgacttttatgata |
22435654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 22436008 - 22435894
Alignment:
| Q |
5 |
acttgctattgggtcatgcatgcacgttgtggcatggtaatgcttgaaaattgttaagtgtaccccatacaatcttttattacccaagagtctttacttg |
104 |
Q |
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| T |
22436008 |
acttgctattgggccatgcatgc----tgtggcatggtaatgcttgaaaattgttgagtgtacccccaacaatcttttattaccctacagtttttaattg |
22435913 |
T |
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| Q |
105 |
tcaaaatactcctatcaaa |
123 |
Q |
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| T |
22435912 |
tcaaaatactactatcaaa |
22435894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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