View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4502-Insertion-1 (Length: 890)
Name: NF4502-Insertion-1
Description: NF4502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4502-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 14811545 - 14812082
Alignment:
| Q |
8 |
tgctccgccggtactgcggaggagtaactaggattgactaacaagcgtgcacccagccacccacacctattacccaagttaagtcatgaatgagatcagc |
107 |
Q |
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| T |
14811545 |
tgctccgccgctattgcggaggagtaactaggattgactaacaagcatgcacccagccacccacacctattacccaagttaagtcatgaatgagatcagc |
14811644 |
T |
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| Q |
108 |
gcacggtgttagataacccgtgacgttaactttgctcatgcttgtattaatctcacgtcaaatcatattaaaatactcctgtcaaaattatattgttcta |
207 |
Q |
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| T |
14811645 |
gcacggtgttggataacccgtgacgttaactttgctcatgcttgtattaatctcacaccaaatcatattaaaatactcctgtcaaaattatattgttcta |
14811744 |
T |
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| Q |
208 |
gattacnnnnnnnnnnatcatctttatatcccttgctctacaagaaaaaatcactatccttttttaaaatatttgacttcaagttcaagccgttattagc |
307 |
Q |
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| T |
14811745 |
gattacttttttttttatcatctttatatcccttgctctacaagaaaaaatcactatcctttttaaaaatatttgacttcaagttcaagccgttattagc |
14811844 |
T |
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| Q |
308 |
aaggaacttcatttctttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattc--aaa |
405 |
Q |
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| T |
14811845 |
aaggaacttca-ttctttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattcaaaaa |
14811943 |
T |
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| Q |
406 |
aaaggaaaatcccnnnnnnnnncactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcaccttacacatatataa |
505 |
Q |
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| T |
14811944 |
aaaggaaaatccc-ctttttttcactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcaccttacacatatataa |
14812042 |
T |
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| Q |
506 |
atactgaacaaccttcatttcactcttcaccaattctcag |
545 |
Q |
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| T |
14812043 |
atactgaacaaccttcatttcactcttcaccaattctcag |
14812082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 624 - 883
Target Start/End: Original strand, 14812155 - 14812411
Alignment:
| Q |
624 |
cactcacaatgcaaactgtttcaacttcacctcttagcgaggtttctagaaaatttgagaaacgatttcttctcaaaggcttaaaattgaagacgagaaa |
723 |
Q |
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| T |
14812155 |
cactcacaatgcaaactgtttcaacttcacctcttagcgaggtttctagaaaatttgagaa-cgatttcttctcaaag-cttaaaattgaagacgagaaa |
14812252 |
T |
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| Q |
724 |
-tcgaaaacggaaaacgaagataaacacgaggtagaagaagaagatgaagatgatgatgagttttacatttgttttcgcagatcctaaaggttcagcgat |
822 |
Q |
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| T |
14812253 |
atcgaaaacg-aaaacgaagataaacacgaggtagaagaagaagatgaagatgatgatgagttt-acatttgttttcgcagatcctaaaggttcaccgat |
14812350 |
T |
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| Q |
823 |
ttccgctgacgatgtgttcgataaaggtcagattcgtccgatttttccctttttcggtcag |
883 |
Q |
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| T |
14812351 |
ttccgctgacgatgtgttcgataaaggtcagattcgtccgatttttccttttttcggtcag |
14812411 |
T |
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