View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4502-Insertion-4 (Length: 356)
Name: NF4502-Insertion-4
Description: NF4502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4502-Insertion-4 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 33698032 - 33698366
Alignment:
| Q |
7 |
agttttttattgaaggaaacgatataaagtctttattaatgaaaaagtagtaaataataattataataatcctacctcttgcttagcaacatatctaata |
106 |
Q |
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| T |
33698032 |
agttttttattgaaggaaacgatataaagtctttattaatgaaaaagtagtaaata---attataataatcctacctcttgcttagcaacatatctaata |
33698128 |
T |
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| Q |
107 |
tatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgaaaaagtactaaataattgatagtgccaaattgcaatgcaa |
206 |
Q |
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| T |
33698129 |
tatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgaaaaagtgctaaataattgatagtgccaaattgcaatgcaa |
33698228 |
T |
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| Q |
207 |
caactctttaaactatgtccaggccagacatatgtatttaaactatgtccagacatatatctttttaat----actattagaagtattatgttaagggtg |
302 |
Q |
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| T |
33698229 |
caactctttaaactatgtccaggccagacatatgtatttaaactatgtccagacatatttctttttaatagtaaatattagaagtattatgttaagggtg |
33698328 |
T |
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| Q |
303 |
tgaaatgtaaatattgaattttcaacctctttatcact |
340 |
Q |
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| T |
33698329 |
tgaaatgtaaatattgaattttcaacctctttatcact |
33698366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 33689586 - 33689763
Alignment:
| Q |
9 |
ttttttattgaaggaaacgatataaagtctttattaatgaaaaagtagtaaataataattataataatcctacctcttgcttagcaacatatctaat--- |
105 |
Q |
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| T |
33689586 |
ttttttattgatggaaaagata--aagtattaattaatgaaaaagtactaaataatt----tggtaatcccacttcttgcttagcaacatatctaatcta |
33689679 |
T |
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| Q |
106 |
--atatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgaaaaagtactaaataattgatag |
188 |
Q |
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| T |
33689680 |
atatatgacactgcttttaattgaaaaatt-atcgaagcaaatgataaaagtttaattattgaagaagtactaaataatttatag |
33689763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 33677392 - 33677443
Alignment:
| Q |
13 |
ttattgaaggaaacgatataaagtctttattaatgaaaaagtagtaaataat |
64 |
Q |
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| T |
33677392 |
ttattgaaggaaacgagataaagtcttaattaatgaaaaagtactaactaat |
33677443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 213
Target Start/End: Complemental strand, 82928 - 82789
Alignment:
| Q |
64 |
taattataataatcctacctcttgcttagcaacatatctaatatatcacattgcttttaatagaaaaatttatcgaa-gaaaatgggaaaggtttaatta |
162 |
Q |
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| T |
82928 |
taattataataatcctacctcttgcttaacaacatatctaatatatcacattgc--ttcaaagaaaaatttatcgaaggaaaatgagaaaggtt------ |
82837 |
T |
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| Q |
163 |
atgaaaaagtactaaataattgatagtgccaaattgcaatgcaacaactct |
213 |
Q |
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| T |
82836 |
---aaatagtactaaataattgataatgccaaattgtaattgaacaactct |
82789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 82776 - 82709
Alignment:
| Q |
243 |
tttaaactatgtccagacatatatctttttaatacta----ttagaagtattatgttaagggtgtgaa |
306 |
Q |
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| T |
82776 |
tttaaactatgtccagacatatttctttttaatagtagatgttagaagtactatgtaaagggtgtgaa |
82709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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