View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4502_high_1 (Length: 239)
Name: NF4502_high_1
Description: NF4502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4502_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2115072 - 2115292
Alignment:
| Q |
1 |
ccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttctcaatgcttccagcaccaatctcctccatttttcttctatgttcaaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2115072 |
ccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttctcaatgcttccagcaccaatctcctccatttttcttctatgttcaaagt |
2115171 |
T |
|
| Q |
101 |
atccgacatactccgaacatatatagtcagatggattcacaaataagcatggaatccaagctgacagcgcatcaaacgaatcaaaggaagaacttttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2115172 |
atccgacatactccgaacatatatagtcagatggattcacaaataagcatggaatccaagctgacaacgcatcaaacgaatcaaaggaagaacttttctt |
2115271 |
T |
|
| Q |
201 |
gtctgaattcatagcaatggc |
221 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2115272 |
gtccgaattcatagcaatggc |
2115292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 11872648 - 11872835
Alignment:
| Q |
1 |
ccaaacatattcatcattagagaaccaagtgagttttgtgttgctagcttctcaatgcttccagcaccaatctcctccatttttcttctatgttcaaagt |
100 |
Q |
| |
|
||||||| |||||||||||||||| | || ||| |||| ||||||| || ||||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
11872648 |
ccaaacacattcatcattagagaaactagcgaggtttgggttgctatctgctcaatgattccagcaccaatatcctccatttttcctctatgttcaaagt |
11872747 |
T |
|
| Q |
101 |
atccgacatactccgaacatatatagtcagatggattcacaaataagcatggaatccaagctgacagcgcatcaaacgaatcaaagga |
188 |
Q |
| |
|
|||||||||||||| ||||||| | |||| ||||||| |||||||||||||||| |||||| |||| ||| ||| ||||||||||| |
|
|
| T |
11872748 |
atccgacatactccaaacatattttgtcacatggatttacaaataagcatggaacccaagcagacaaagcagtaaaagaatcaaagga |
11872835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 42050703 - 42050584
Alignment:
| Q |
24 |
accaagtgagttttgtgttgctagcttctcaatgcttccagcaccaatctcctccatttttcttctatgttcaaagtatccgacatactccgaacatata |
123 |
Q |
| |
|
||||||||||||||| ||||||| | | || || ||| || ||||| |||||||||||||| || ||||| |||||||| | |||||| ||||||||| |
|
|
| T |
42050703 |
accaagtgagttttgagttgctaacctttcgattactccggcgccaatgtcctccatttttctcctgtgttcgaagtatccaatatactctgaacatata |
42050604 |
T |
|
| Q |
124 |
tagtcagatggattcacaaa |
143 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
42050603 |
tggtcagatggattcacaaa |
42050584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University