View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4502_low_2 (Length: 448)
Name: NF4502_low_2
Description: NF4502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4502_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 20632904 - 20633335
Alignment:
| Q |
11 |
aataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatgga |
110 |
Q |
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| T |
20632904 |
aataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatgga |
20633003 |
T |
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| Q |
111 |
gtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagt |
210 |
Q |
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| T |
20633004 |
gtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagt |
20633103 |
T |
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| Q |
211 |
tatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaattt |
310 |
Q |
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| T |
20633104 |
tatgcagaagagtgaagttaccggcagtgacagataagaaagcttttgagatgttgaagtccaaataagaaaaagggtagaaatgaaggcgaatgaattt |
20633203 |
T |
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| Q |
311 |
cggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagt |
410 |
Q |
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| T |
20633204 |
cggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagt |
20633303 |
T |
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| Q |
411 |
gcttttgctgttaaggacttgttgatgatgtc |
442 |
Q |
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| T |
20633304 |
gcttttgctgttaaggacttattgatgatgtc |
20633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 20649003 - 20649428
Alignment:
| Q |
11 |
aataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649003 |
aataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatgga |
20649102 |
T |
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| Q |
111 |
gtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagt |
210 |
Q |
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| T |
20649103 |
gtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagt |
20649202 |
T |
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| Q |
211 |
tatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaattt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||||| |
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| T |
20649203 |
tatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatattgaaattcaaataagaaaaagggtagaaatgaaggcgaatgaattt |
20649302 |
T |
|
| Q |
311 |
cggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
20649303 |
cggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattgaagatttgaag---gt |
20649399 |
T |
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| Q |
411 |
gcttttgctgttaaggacttgttgatgat |
439 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20649400 |
gcttttgctgttaaggacttgttgatgat |
20649428 |
T |
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