View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503-Insertion-1 (Length: 823)
Name: NF4503-Insertion-1
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 14811545 - 14812082
Alignment:
| Q |
8 |
tgctccgccggtactgcggaggagtaactaggattgactaacaagcgtgcacccagccacccacacctattacccaagttaagtcatgaatgagatcagc |
107 |
Q |
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| T |
14811545 |
tgctccgccgctattgcggaggagtaactaggattgactaacaagcatgcacccagccacccacacctattacccaagttaagtcatgaatgagatcagc |
14811644 |
T |
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| Q |
108 |
gcacggtgttagataacccgtgacgttaactttgctcatgcttgtattaatctcacgtcaaatcatattaaaatactcctgtcaaaattatattgttcta |
207 |
Q |
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| T |
14811645 |
gcacggtgttggataacccgtgacgttaactttgctcatgcttgtattaatctcacaccaaatcatattaaaatactcctgtcaaaattatattgttcta |
14811744 |
T |
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| Q |
208 |
gattacnnnnnnnnnnatcatctttatatcccttgctctacaagaaaaaatcactatccttttttaaaatatttgacttcaagttcaagccgttattagc |
307 |
Q |
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| T |
14811745 |
gattacttttttttttatcatctttatatcccttgctctacaagaaaaaatcactatcctttttaaaaatatttgacttcaagttcaagccgttattagc |
14811844 |
T |
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| Q |
308 |
aaggaacttcatttctttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattc--aaa |
405 |
Q |
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| T |
14811845 |
aaggaacttca-ttctttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattcaaaaa |
14811943 |
T |
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| Q |
406 |
aaaggaaaatcccnnnnnnnnncactagaagaccaaatgaaaaatcaacggtgacccatatttgagtagccacgtggcatctcaccttacacatatataa |
505 |
Q |
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| T |
14811944 |
aaaggaaaatccc-ctttttttcactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcaccttacacatatataa |
14812042 |
T |
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| Q |
506 |
atactgaacaaccttcatttcactcttcaccaattctcag |
545 |
Q |
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| T |
14812043 |
atactgaacaaccttcatttcactcttcaccaattctcag |
14812082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 625 - 710
Target Start/End: Original strand, 14812155 - 14812240
Alignment:
| Q |
625 |
cactcacaatgtaaactgtttcaacttcacctcttagcgaggtttctagaaaatttgagaacgatttcttctcaaagcttaaaatt |
710 |
Q |
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| T |
14812155 |
cactcacaatgcaaactgtttcaacttcacctcttagcgaggtttctagaaaatttgagaacgatttcttctcaaagcttaaaatt |
14812240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 773 - 817
Target Start/End: Original strand, 14812303 - 14812347
Alignment:
| Q |
773 |
tgatgatgagtttacatttgttttcgcagatcctaaaggttcacc |
817 |
Q |
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| T |
14812303 |
tgatgatgagtttacatttgttttcgcagatcctaaaggttcacc |
14812347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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