View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503-Insertion-4 (Length: 384)
Name: NF4503-Insertion-4
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 41 - 320
Target Start/End: Original strand, 19950853 - 19951135
Alignment:
| Q |
41 |
ttgaaggaaaatcattgtttttcttaattaaaatgatatatattttgaaaagcaaatcattgttttttg-tatggtcata--gggacatgcaattgatta |
137 |
Q |
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| T |
19950853 |
ttgaaggaaaatcattgtttttcttaattaaaatgatatatattttgaaaagcaaatcattgttttttggtatggtcatatagggacatgcaattgatta |
19950952 |
T |
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| Q |
138 |
ccaactatttgacaccacacatacacatttccttcaactacaaattaacaaaccgaccatgtgaatttcacgttaatttgtgtgtaaactcaacaatcca |
237 |
Q |
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| T |
19950953 |
ccaactatttgacaccacacatacacatttccttcaactacaaattaacaaaccgaccatgtgaatttcacgttaatttgtgtgtaaactcaacaatcca |
19951052 |
T |
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| Q |
238 |
taacaattaaagaagagaattacatttggtggtggagctagggttcatagtgcaccacatggcactacttaaagccatggacc |
320 |
Q |
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| T |
19951053 |
taacaattaaagaagagaattacatttggtggtggagctagggttcatagtgcaccacatggcactacttaaagccatggacc |
19951135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 19951129 - 19951180
Alignment:
| Q |
337 |
atggacctcaacttcaaccat----gaagggttggtaatatcactatcggag |
384 |
Q |
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| T |
19951129 |
atggacctcaacttcaaccataaagaaagggttggtaatatcactatcggag |
19951180 |
T |
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