View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4503-Insertion-7 (Length: 310)

Name: NF4503-Insertion-7
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4503-Insertion-7
NF4503-Insertion-7
[»] chr2 (1 HSPs)
chr2 (7-310)||(9417667-9417984)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 9417667 - 9417984
Alignment:
Q  7 accaattacatagtcaatgtttgaggattccaattttttgagtgattctttatctactacattatcacaaaa-aatatttaccaccctcaagaggatggg 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9417667 accaattacatagtcaatgtttgaggattcaaattttttgagtgattctttatctactacattatcacaaaaaaatatttaccaccctcaagaggatggg 9417766  T
Q  106 tttcacttcccacgaggatatacacgttggtcggagtcaactttgagaatgtggacatgagtgtaataat---------------taattgtggctgctc 190  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||| |||||    
T  9417767 ttccacttcccacgaggatatacacgttggtcggagtcaactttgagaatgtggacatgagtgtaataatttacttaattataaataattgtgggtgctc 9417866  T
Q  191 catttgagtcagtcaacaataaacttgtactttacttgccactaaatttgcatgtgaagacgcgtctcacaagcaaagaaattacaatagtaaattaagc 290  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  9417867 catttgagtcagtcaacaataaacttgtactttacttggcactaaatttgcatgtgaagacgcgtctcacaagcaaagaa---acaatagtaaattaagc 9417963  T
Q  291 caatg-aaccaaacccatgca 310  Q
    ||||| |||||||||||||||    
T  9417964 caatgaaaccaaacccatgca 9417984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University