View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503-Insertion-8 (Length: 240)
Name: NF4503-Insertion-8
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 30363437 - 30363593
Alignment:
| Q |
84 |
tctttggtaatctatcttggaaaagcctctgaaagaatcatgattcatgtcgaagaatattcttcattgctttgaaagtccaccctatcaactaagtttc |
183 |
Q |
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| T |
30363437 |
tctttggtaatctatcttggaaaagcctctgaaagaatcatgattcatatcgaagaatattcttcattgctttgaaagtccaccctatcaactaagtttc |
30363536 |
T |
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| Q |
184 |
gaagacctactagcaagtcctcgtcccacttaatcaccattcgccacggacacgacc |
240 |
Q |
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| T |
30363537 |
gaagacctactagcaactcctcctcccacttaatcaccattcaccactgacacgacc |
30363593 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 29399781 - 29399703
Alignment:
| Q |
8 |
tttacaacccttaccatgaccacactgacatttagatgttataagaa-ttttgcatgt-aaaaacaagtgatttcactt |
84 |
Q |
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| T |
29399781 |
tttacaacctttaccatgaacaaactgacatttagatgttataagaatttttgcatgtgaaaaacaagtgatttcactt |
29399703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30363390 - 30363437
Alignment:
| Q |
8 |
tttacaacccttaccatgaccacactgacatttagatgttataagaat |
55 |
Q |
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| T |
30363390 |
tttacaacccttaccatgaccacactgacatttagatgttataagaat |
30363437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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