View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503_high_1 (Length: 475)
Name: NF4503_high_1
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 1216516 - 1216983
Alignment:
| Q |
13 |
gaagctaaaacttttgtgaaaactgattattatttactaagggactcaattgggagagtgagttcaccatttaa-----------------ctgcatgtt |
95 |
Q |
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| T |
1216516 |
gaagctaaaacttttgtgaaaaatgattattatttactcagggactcatttgggtgagtgagttcaccttttaagattcttccgccaataactgcatgtt |
1216615 |
T |
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| Q |
96 |
gttctagtttcattttcctgaattattctttgtgtagattacgacaaaatctactgaattcagaaaaggtacaaatgcaattggaaacagagattcaaag |
195 |
Q |
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| T |
1216616 |
cttctagtttcattttcctgaattattctatgtgtagattgcgacaaattctactgaagtcagaaaaggtacaaatgcaattggaaacagagattcaaag |
1216715 |
T |
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| Q |
196 |
tgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgccactg |
295 |
Q |
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| T |
1216716 |
tgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgccactg |
1216815 |
T |
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| Q |
296 |
taagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcagtttgcagtacttgaagtcaaagtgggcctggaccctcca |
395 |
Q |
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| T |
1216816 |
taagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcactttgcagtacttgaagtcaaagtgggcctggacgctcca |
1216915 |
T |
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| Q |
396 |
actggctgcaacatgttatctatgatgacgaatataattaaaacaaaatccttgcgatctgaagtttt |
463 |
Q |
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| T |
1216916 |
actggctgcagcatgttatctatgatgacgaatataattaaaacaaaatccttgcaatctgaagtttt |
1216983 |
T |
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