View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503_high_2 (Length: 383)
Name: NF4503_high_2
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Complemental strand, 42411059 - 42410699
Alignment:
| Q |
9 |
acatcatcaaacaaacatacatttaagaaatatctcctaattgaatactagaaataaatgtggaacttccagaagatatataaagacatgtaattgggat |
108 |
Q |
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| T |
42411059 |
acatcataaaacaaacatacatttaagaaatatctcctaattgaatactagaaataaatgtggaacttccagaagatatataaagacatgtaattgggat |
42410960 |
T |
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| Q |
109 |
agaaatgattgattccgaaggtgaagaagagtatcaacttatccaaactgcaaaccaatctctgacaattagatcttcagctttacatattactggccca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410959 |
agaaatgattgattccgaaggtgaagaagagtatcaacttatccaaaccgcaaaccaatctctgacaattagatcttcagctttacatattactggccca |
42410860 |
T |
|
| Q |
209 |
tatttaaagaacctatgaattcaaaagacttttcaggttctaggtagtcataaaatgtcagcttgacaaaatattccagggtagtttaggttgttcaaac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42410859 |
tatttaaagaacctatgaattcaaaagacttttcaggttctagatagtcataaaatgtcagcttgacaaaatattccagggtagtttaggttgttcaaac |
42410760 |
T |
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| Q |
309 |
actagctgagctttaatttgattgaaccaggatttgagaagtttcggttataacattgtga |
369 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42410759 |
actagctgagctttaatttgattgaacctggatttgagaagtttcggttataacattgtga |
42410699 |
T |
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