View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503_high_5 (Length: 325)
Name: NF4503_high_5
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 16908774 - 16909073
Alignment:
| Q |
11 |
catcatcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagt |
110 |
Q |
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| T |
16908774 |
catcatcaccgtcttcggcatcttcgattttcctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagt |
16908873 |
T |
|
| Q |
111 |
agggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcaccccttcttcttcatcttcttcttta |
210 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908874 |
agggaacttgttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcaccccttcttcttcatcttcttcttta |
16908973 |
T |
|
| Q |
211 |
ccatgtcctctaccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaatagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908974 |
ccatgtcctctaccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaatagt |
16909073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 14869887 - 14869595
Alignment:
| Q |
15 |
atcaccgtcttcggcatcttcgatttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtaggg |
114 |
Q |
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|||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
14869887 |
atcaccatcttcaacatcttcaattttcctaacaacccaaatgaaatcatggccagaatgttcaagtgcatgagctatttcaacaagctgaggagtaggg |
14869788 |
T |
|
| Q |
115 |
aacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaagccacttaagcaccccttcttcttcatcttcttctttaccat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
14869787 |
aacttgttcatgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccat |
14869688 |
T |
|
| Q |
215 |
gtcctctaccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaat |
307 |
Q |
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| T |
14869687 |
gccctctacccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaat |
14869595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 14710257 - 14710396
Alignment:
| Q |
45 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
144 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| || ||||||||||| | ||| |||||||| | |||| |
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| T |
14710257 |
aacaacccaaatgaaatcatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatag |
14710356 |
T |
|
| Q |
145 |
agaacagaatcatctttctttgaatcaagccacttaagca |
184 |
Q |
| |
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|||||||||| |||||||| || | |||||| ||||||| |
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| T |
14710357 |
agaacagaattctctttcttagagttaagccatttaagca |
14710396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 26260450 - 26260388
Alignment:
| Q |
38 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa |
100 |
Q |
| |
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|||| ||||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||| |
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| T |
26260450 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaa |
26260388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 26204459 - 26204405
Alignment:
| Q |
42 |
tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca |
96 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
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| T |
26204459 |
tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26204405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 26224097 - 26224043
Alignment:
| Q |
42 |
tctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttca |
96 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| |||||||||||||| |
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| T |
26224097 |
tctaacaacccaaatgaaattatgaccagaattttcaagaccatgagctatttca |
26224043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 26227550 - 26227488
Alignment:
| Q |
38 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaa |
100 |
Q |
| |
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|||| ||||||||||||||||||| ||| || |||| |||||| ||||||||||||| |||| |
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| T |
26227550 |
ttttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaa |
26227488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 17572660 - 17572779
Alignment:
| Q |
45 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
144 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||||||||| | ||| |||||||| |||||| |
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| T |
17572660 |
aacaacccaaatgaaatcatggcttgaagtttcaagtgcatgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatag |
17572759 |
T |
|
| Q |
145 |
agaacagaatcatctttctt |
164 |
Q |
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|
|||||||||| |||||||| |
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| T |
17572760 |
agaacagaattctctttctt |
17572779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 17620052 - 17619933
Alignment:
| Q |
45 |
aacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatag |
144 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||| | ||||||||||| | ||| |||||||| |||||| |
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| T |
17620052 |
aacaacccaaatgaaattatggcttgaagcttcaagtgcatgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatag |
17619953 |
T |
|
| Q |
145 |
agaacagaatcatctttctt |
164 |
Q |
| |
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| |||||||| |||||||| |
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| T |
17619952 |
ataacagaattctctttctt |
17619933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 5995045 - 5995166
Alignment:
| Q |
38 |
tttttctaacaacccaaatgaaatcatggccagaatcttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaact |
137 |
Q |
| |
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|||||||||||||||||||||||| ||| || |||| |||||||||||| || |||||||| | |||| | ||| || || ||||| || |||||||| |
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| T |
5995045 |
tttttctaacaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttcaactaactgagaataaggaaatttattcatactgccaaaact |
5995144 |
T |
|
| Q |
138 |
aacatagagaacagaatcatct |
159 |
Q |
| |
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||||| | ||||||| ||||| |
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| T |
5995145 |
tacatataaaacagaaccatct |
5995166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 12613541 - 12613434
Alignment:
| Q |
74 |
cttcaagtgcatgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttctttgaatcaag |
173 |
Q |
| |
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|||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||| ||| |
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| T |
12613541 |
cttcaagtgcatgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaag |
12613442 |
T |
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| Q |
174 |
ccacttaa |
181 |
Q |
| |
|
||| |||| |
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|
| T |
12613441 |
ccatttaa |
12613434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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