View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503_low_12 (Length: 222)
Name: NF4503_low_12
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 4900776 - 4900579
Alignment:
| Q |
12 |
agcacagaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaaatttggtttcctcctaattcaagaaagaaagaaaaaa-cat |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |
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| T |
4900776 |
agcacaaaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaactttggtttcctcctaattcaagaaagaaaaaaaaaaacat |
4900677 |
T |
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| Q |
111 |
aataaattaaatacagatatgttatgttctttcacaatgcaaaatacatagtgaggaaaaggaagggttaatagaaagaccttggtgacattgcaagt |
208 |
Q |
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| T |
4900676 |
aataaattaaacacagatatgttatgttctttcacaatgcaaaatacatagtgaggaaaaggaagggttaatagaaagaccttggtgacattgcaagt |
4900579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 4948174 - 4947976
Alignment:
| Q |
12 |
agcacagaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaaatttggtttcctcctaattcaagaaagaaagaaaaaac--a |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
4948174 |
agcacaaaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaactttggtttcctcctaattcaagaaagaaaaaaaaaaacaa |
4948075 |
T |
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| Q |
110 |
taataaattaaatacagatatgttatgttctttcacaatgcaaaatacatagtgaggaaaaggaagggttaatagaaagaccttggtgacattgcaagt |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948074 |
taataaattaaacacagatatgttatgttctttcacaatgcaaaatacatagtgaggaaaaggaagggttaatagaaagaccttggtgacattgcaagt |
4947976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 5009947 - 5009794
Alignment:
| Q |
12 |
agcacagaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaaatttggtttcctcctaattcaagaaag-aaagaaaaaacat |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
5009947 |
agcacaaaacaaagcactatctgattgtgtcacatcagtgtagccatcaatggtaacaactttggtttcctcctaattcaagaaagaaaaaaaaaaacat |
5009848 |
T |
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| Q |
111 |
aataaattaaatacagatatgttatgttctttcacaatgcaaaatacatagtga |
164 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5009847 |
aataaattaaacacagatatgttatgttctttcacaatgcaaaatacatagtga |
5009794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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