View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4503_low_4 (Length: 367)
Name: NF4503_low_4
Description: NF4503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4503_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 21196226 - 21196570
Alignment:
| Q |
9 |
attattctgtaagactaatttgtcaaaaatgtgtaatattttatagtcttggagactannnnnnnnnnnnnnnnnnnnnnntggttatattacatgcact |
108 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21196226 |
attattctgtaagactaattaatcaaaaatgtgtaatattttatagtcttggagactatttttgattttttgttttgtttgtggttatattacatgcact |
21196325 |
T |
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| Q |
109 |
ttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacataaacccaattaaaaggagagaccaaaactcatagccatttactc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196326 |
ttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcagcataaacccaattaaaaggagagaccaaaactcatagccatttactc |
21196425 |
T |
|
| Q |
209 |
gaagttgtcctcatagatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaacttagtcctacacatgttacataatttgaac |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196426 |
gaagttgtcctcattgatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaacttagtcctacacatgttacataatttgaac |
21196525 |
T |
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| Q |
309 |
tagatactaaattagcaaactcatataaaaataaaacaataaaaa |
353 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21196526 |
tagatactaacttagcaaactcatataaaaataaaacaataaaaa |
21196570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 96 - 353
Target Start/End: Original strand, 27252055 - 27252313
Alignment:
| Q |
96 |
tattacatgcac-tttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacataaacccaattaaaaggagagaccaaaactc |
194 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
27252055 |
tattacatgcacctttacgacttcaataaaatcttttgctatgagtttgtacttaatcatgtctcaacatacacccaattaaaaggagagacaaaaactc |
27252154 |
T |
|
| Q |
195 |
atagccatttactcgaagttgtcctcatagatgatgatccatggaaggaatgtagcagcatgatctaattttttcctgctgaacttagtcctacacatgt |
294 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252155 |
atagccatttactcgaaattgtcctcatagatgatgatacatggaaggaatgtagcagcatgatctaattttttcctgctgaacttagtcctacacatgt |
27252254 |
T |
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| Q |
295 |
tacataatttgaactagatactaaattagcaaactcatataaaaataaaacaataaaaa |
353 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252255 |
tacataatctgaactagatactaaattagcaaactcatataaaaataaaacaataaaaa |
27252313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 27251975 - 27252032
Alignment:
| Q |
9 |
attattctgtaagactaatttgtcaaaaatgtgtaatattttatagtcttggagacta |
66 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27251975 |
attattctgtaagactaattattcaaaaatgtgtaatattttatagtcttggagacta |
27252032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 27268795 - 27268834
Alignment:
| Q |
27 |
tttgtcaaaaatgtgtaatattttatagtcttggagacta |
66 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| |
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| T |
27268795 |
tttgtcaaaattgtgtaatgttttatagtcttggagacta |
27268834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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