View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-10 (Length: 560)
Name: NF4504-Insertion-10
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Complemental strand, 43552486 - 43551946
Alignment:
| Q |
7 |
aagaagatagtgggggctcccaatatttttatcagttctctgaatttagaaagctacaaaaatttgatagtgtatgtttgtttgagaggaagagagagat |
106 |
Q |
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| T |
43552486 |
aagaagatagtgggggctcccaatatttttatcagttctctgaatttagaaaactacaaaaatttgatagtgtatgtttgtttgagaggaagagagagaa |
43552387 |
T |
|
| Q |
107 |
ttagggaaatttgattttcgaaatgtgagatattggaggtggaggacaaaggtattattgtcaccttttccctgttcctatctaaatggattttattaat |
206 |
Q |
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| T |
43552386 |
ttagggaaaattgattttctaaatgtgagatattggaggtggaggacaaaggtattattgtcaccttttccctgtttctatctaaatggattttattaat |
43552287 |
T |
|
| Q |
207 |
caactttggcaacatgctcgtgtcttcctcaactagtccggttgttacaagacaacatcataggttttttcaagtattatttggcttcactaacaagttg |
306 |
Q |
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| T |
43552286 |
caactttggcaacatgctcgtgtcttcctcaactagtccggttgttacaagacaacatcataggttttttcaagtattatttggcttcactaacaagttg |
43552187 |
T |
|
| Q |
307 |
agtcttaatgagtcctattcttcacttccccaaaaataaaattaagggtacgnnnnnnnnnnnnnnnnnnnnnccccttttattacatatttgaatttcg |
406 |
Q |
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| T |
43552186 |
agtcttaatgagtcctattcttcactcccccaaaaataaaattaagggtacg---------taataataataactccttttattacatatttgaatttgg |
43552096 |
T |
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| Q |
407 |
taaaatttgtcatgcattttaaatttcaaccgtttgatcttaaattaacaattaaaatt-gttgaatatgattttgttattgtttaatttgagctgttta |
505 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |
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| T |
43552095 |
taaaatttgtcatgcattttaaatttcaaccgtgtgatctcaaattaacaattaaaattaattgaatctgattttgttattgtttaatttgaggtgttta |
43551996 |
T |
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| Q |
506 |
atatcatatgaatattcgagatagcctacaaactatgaatcacgtacaca |
555 |
Q |
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| T |
43551995 |
atatcatatgaatatacgagataacctacaacctatgaagcacgaacaca |
43551946 |
T |
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