View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-12 (Length: 372)
Name: NF4504-Insertion-12
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 3332067 - 3332431
Alignment:
| Q |
8 |
aacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagc |
107 |
Q |
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| T |
3332067 |
aacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagc |
3332166 |
T |
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| Q |
108 |
gaaagaatctcgaaccttccatgaagtgtaacaacagccccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgc |
207 |
Q |
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| T |
3332167 |
gaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgc |
3332266 |
T |
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| Q |
208 |
aaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgct |
307 |
Q |
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| T |
3332267 |
aaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgct |
3332366 |
T |
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| Q |
308 |
gtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtc |
372 |
Q |
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| T |
3332367 |
gtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtc |
3332431 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 13212814 - 13212889
Alignment:
| Q |
297 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtc |
372 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtc |
13212889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 32803230 - 32803275
Alignment:
| Q |
327 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtc |
372 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtc |
32803275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 16578665 - 16578620
Alignment:
| Q |
327 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtc |
372 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtc |
16578620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 32809703 - 32809735
Alignment:
| Q |
340 |
tgtttttggatccagctggtcttcctcttggtc |
372 |
Q |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtc |
32809735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
314 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
367 |
Q |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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