View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-13 (Length: 355)
Name: NF4504-Insertion-13
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-13 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 33698032 - 33698366
Alignment:
| Q |
7 |
agttttttattgaaggaaatgatataaagtctttattaatgaaaaagtattatataataattataataatcctacctcttgcttag-aacatatctaata |
105 |
Q |
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| T |
33698032 |
agttttttattgaaggaaacgatataaagtctttattaatgaaaaagtagta---aataattataataatcctacctcttgcttagcaacatatctaata |
33698128 |
T |
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| Q |
106 |
tatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgtaaaggtactaaataattgatagtgccaaattgcaatgcaa |
205 |
Q |
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| T |
33698129 |
tatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgaaaaagtgctaaataattgatagtgccaaattgcaatgcaa |
33698228 |
T |
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| Q |
206 |
caactctttaaactatgtccaggccagacatatgtatttaaactatgtccagacatatatctttttaat----actattagaagtattatgttaagggtg |
301 |
Q |
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| T |
33698229 |
caactctttaaactatgtccaggccagacatatgtatttaaactatgtccagacatatttctttttaatagtaaatattagaagtattatgttaagggtg |
33698328 |
T |
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| Q |
302 |
tgaaatgtaaatattgaattttcaacctctttatcact |
339 |
Q |
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| T |
33698329 |
tgaaatgtaaatattgaattttcaacctctttatcact |
33698366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 33689675 - 33689763
Alignment:
| Q |
98 |
atctaatatatcacattgcttttaatagaaaaatttatcgaagaaaatgggaaaggtttaattaatgtaaaggtactaaataattgatag |
187 |
Q |
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| T |
33689675 |
atctaatatatgacactgcttttaattgaaaaa-ttatcgaagcaaatgataaaagtttaattattgaagaagtactaaataatttatag |
33689763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 33677392 - 33677434
Alignment:
| Q |
13 |
ttattgaaggaaatgatataaagtctttattaatgaaaaagta |
55 |
Q |
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| T |
33677392 |
ttattgaaggaaacgagataaagtcttaattaatgaaaaagta |
33677434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 82928 - 82789
Alignment:
| Q |
64 |
taattataataatcctacctcttgctt-agaacatatctaatatatcacattgcttttaatagaaaaatttatcgaa-gaaaatgggaaaggtttaatta |
161 |
Q |
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| T |
82928 |
taattataataatcctacctcttgcttaacaacatatctaatatatcacattgc--ttcaaagaaaaatttatcgaaggaaaatgagaaaggttaaat-- |
82833 |
T |
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| Q |
162 |
atgtaaaggtactaaataattgatagtgccaaattgcaatgcaacaactct |
212 |
Q |
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| T |
82832 |
-------agtactaaataattgataatgccaaattgtaattgaacaactct |
82789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 82776 - 82709
Alignment:
| Q |
242 |
tttaaactatgtccagacatatatctttttaatacta----ttagaagtattatgttaagggtgtgaa |
305 |
Q |
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| T |
82776 |
tttaaactatgtccagacatatttctttttaatagtagatgttagaagtactatgtaaagggtgtgaa |
82709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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