View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-14 (Length: 209)
Name: NF4504-Insertion-14
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 36524673 - 36524469
Alignment:
| Q |
8 |
aatatcatcacctttctcttctt---tatttcttataaagttctcaagctcatttcttagaatttctagcattgcacttttctcttcaaattgatatttg |
104 |
Q |
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| T |
36524673 |
aatatcatcacctttctcttcttctttatttcttataaagttctcaagctcatttcttagaatttctagcattgcacttttctcttcaaattgatatttg |
36524574 |
T |
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| Q |
105 |
gcttctgagagcttcatatggactcgttcttcgcgcaaaatgtcagctaactgaagcatttctctctccttttcaacttcttctctaactttctccgatt |
204 |
Q |
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| T |
36524573 |
gcttctgagagcttcatatggactcgttcttcgcgcaaaatgtcggctaactgaagcatttctctctccttttcaacttcttctcgaactttctccgatt |
36524474 |
T |
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| Q |
205 |
ccctt |
209 |
Q |
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||||| |
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| T |
36524473 |
ccctt |
36524469 |
T |
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Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 18971032 - 18971194
Alignment:
| Q |
34 |
ttcttataaagttctcaagctcatttcttagaatttctagcattgcacttttctcttcaaattgatatttggcttctgagagcttcatatggactcgttc |
133 |
Q |
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|||| ||||||| ||||||||||||||||| |||||| | || |||||||||| |||||||| ||||| ||||| |||||||| ||||||| || |
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| T |
18971032 |
ttctcataaagtcttcaagctcatttcttagcttttctacaaaatcatttttctcttcgaattgatacttggcctctgaaagcttcatctggactctctc |
18971131 |
T |
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| Q |
134 |
ttcgcgcaaaatgtcagctaactgaagcatttctctctccttttcaacttcttctctaacttt |
196 |
Q |
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| T |
18971132 |
ctcgcgcaaaacatccgctaactgaagcatttccctctccttttccacctcttcacgaacttt |
18971194 |
T |
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