View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-15 (Length: 184)
Name: NF4504-Insertion-15
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 7e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 7e-94
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 36355535 - 36355354
Alignment:
| Q |
3 |
caacaatagctactactcttgggaaaatttctctatcccaattcatctttgtttcttcacagttatccttttcttcgtgttagcattttcatggtacata |
102 |
Q |
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| T |
36355535 |
caacaatagctactactcttgggaaaatttctctatcccaattcatctttgtttcttcacaattatccttttcttcgtgttagcattttcatggtacata |
36355436 |
T |
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| Q |
103 |
aactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtgccactaatattgttgcttgttg |
184 |
Q |
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| T |
36355435 |
aactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtaccactaatattgttgcttgttg |
36355354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 36354249 - 36354068
Alignment:
| Q |
3 |
caacaatagctactactcttgggaaaatttctctatcccaattcatctttgtttcttcacagttatccttttcttcgtgttagcattttcatggtacata |
102 |
Q |
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||||||||||||||| | |||||| |||| ||| ||||| ||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
36354249 |
caacaatagctactatttctgggaatatttttctttcccagttcatctttgtttattcatgttcatccttttctttgtgttagcattttcatggtacata |
36354150 |
T |
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| Q |
103 |
aactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtgccactaatattgttgcttgttg |
184 |
Q |
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| T |
36354149 |
aactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattgttgcttgttg |
36354068 |
T |
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