View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-16 (Length: 170)
Name: NF4504-Insertion-16
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 5e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 2019294 - 2019457
Alignment:
| Q |
8 |
gatttgacctctataaataccaatcatcctgtaatcattactaaacgacgatcaatgaagaatattcaaattccc-ctcatattctctttcatatctatt |
106 |
Q |
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| T |
2019294 |
gatttgacctctataaataccaatcatcctgtaatcattactaaacgttgatcaatgaagaatattcagattccctctcatattctctttcatatctatt |
2019393 |
T |
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| Q |
107 |
tctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtgttcc |
170 |
Q |
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| T |
2019394 |
tctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtgttcc |
2019457 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 1990425 - 1990491
Alignment:
| Q |
105 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaa-ttgatactggtgttcc |
170 |
Q |
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| T |
1990425 |
tttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttcc |
1990491 |
T |
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