View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-2 (Length: 989)
Name: NF4504-Insertion-2
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 319 - 989
Target Start/End: Original strand, 2175668 - 2176342
Alignment:
| Q |
319 |
tgtgataaccgtagatatcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctatcgcattatattggattt |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||| |
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| T |
2175668 |
tgtgatcaccgtagatatcatttgaaaatgagcggttcaaattgaattgaacttatgattgatcgaggtatttagaatcctatctcgttatattggattt |
2175767 |
T |
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| Q |
419 |
gctttctatnnnnnnntgttggtaaaagaaattaatatttaccgatatttatgaattattataagtccccaaaaggtgatatgtctcatattagaagtct |
518 |
Q |
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| T |
2175768 |
gctttctataaaaaaatgttactaaaagaaattaatatttaccgatatttatgaaatattagaagtccccaaaaggtgatatgtctcatattagaagtct |
2175867 |
T |
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| Q |
519 |
agaaggttctaaaccccaaaaggttcgatcttaatgtgatatgtctatgaaacccaatatcatgtaatacttgacctatatgtcatatgtctagtttgta |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2175868 |
agaaggttctaaaccccaaaaggttcgatcttaatgtgatatgtctatgaaactcaatatcatgtaatacttgacctatatgtcatatgtttagtttgta |
2175967 |
T |
|
| Q |
619 |
cttctgttttctcctatatatggcaccgacacgcctcattgaagatatgtcctgatgttcaacatgtgtcgtgtgcgacatcaacactcannnnnnnaaa |
718 |
Q |
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||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||| ||| |
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| T |
2175968 |
cttttgctttctcatatatatggcaccgacacgcctcattgaagatatgccctgatgttcaacatatgtcgtgtgcgacaccgacactcattttcttaaa |
2176067 |
T |
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| Q |
719 |
attttatccatatcgacatgtccatgttagtatcgtgttcggtgttcgtgctttatagttgatatatatcttcttaccttgccatt-nnnnnnnngcctt |
817 |
Q |
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| T |
2176068 |
attttatccatatcgacatgtccatgtcagtgtcgtgtctggtgttcgtgcttcatagttgatatatatcttcttaccttgccattaaaaaaaaagcctt |
2176167 |
T |
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| Q |
818 |
acgaacctctgataaaaactttctaccacataactgaaaattatctatgtat-aaacgctcaagaagggaagccttccct-aaaaataacatgcttttgt |
915 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
2176168 |
gcgaacctctgataaaaactttctaccacataactgaaaattatctatgtataaaacgctcaagaagggaagccttccctaaaaaataacaggcttttgt |
2176267 |
T |
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| Q |
916 |
c-aaccaaatcattcagatcatcataaatagaaagttggccaattccattgcccagttccaatgtcaagaaaatc |
989 |
Q |
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| T |
2176268 |
caaaccaaatcattcagatcatcataaatagaaagttggccaattccattgcccagttccaatgtcaagaaaatc |
2176342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 2175343 - 2175558
Alignment:
| Q |
8 |
ggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccatttattgcccaggttggctcttacttagtcaaactctacaattaa |
107 |
Q |
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| T |
2175343 |
ggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccatttgt-----------------actgagtcaaactctac--ttaa |
2175423 |
T |
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| Q |
108 |
acatgtccttatcttcatttgtactagtactagtacgtataataactatcacaaatgatagtgattttactaaaacagaaagttctaatgatcttcatga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2175424 |
acatgtccttatcttcatttgtactagtactagtacgtataataactatcacaaatgatagtgattttactaaaacagaaagttctaatgatcttgatga |
2175523 |
T |
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| Q |
208 |
gactcaaaaatataagcatttgtgggttgaatgcg |
242 |
Q |
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| T |
2175524 |
gactaaaaaatataagcatttgtgggttgaatgcg |
2175558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 18061418 - 18061353
Alignment:
| Q |
336 |
tcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctat |
401 |
Q |
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| T |
18061418 |
tcatttgaaaatgagcagttcagatcgaatcgaacttttgattgatccaggtacttggaatcctat |
18061353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 36319076 - 36319141
Alignment:
| Q |
336 |
tcatttgaaaatgagcggttcagattgaattgaacttatgattgatggaggtacttagaatcctat |
401 |
Q |
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|||||||||||||||| |||||||| |||| ||||| |||||||| |||||||| ||||||||| |
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| T |
36319076 |
tcatttgaaaatgagcagttcagatcgaatcaaacttttgattgatccaggtacttggaatcctat |
36319141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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