View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4504-Insertion-3 (Length: 952)

Name: NF4504-Insertion-3
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4504-Insertion-3
NF4504-Insertion-3
[»] chr2 (34 HSPs)
chr2 (10-659)||(28478118-28478768)
chr2 (700-950)||(28481616-28481867)
chr2 (511-659)||(28492857-28493008)
chr2 (708-864)||(28493085-28493240)
chr2 (371-465)||(28492744-28492838)
chr2 (254-345)||(28492305-28492395)
chr2 (861-948)||(22966781-22966872)
chr2 (873-950)||(31629612-31629692)
chr2 (873-936)||(15123933-15123999)
chr2 (865-946)||(13453942-13454027)
chr2 (865-941)||(31227544-31227622)
chr2 (103-190)||(36635750-36635840)
chr2 (881-941)||(15610824-15610887)
chr2 (864-950)||(9979094-9979184)
chr2 (102-183)||(24023956-24024039)
chr2 (873-950)||(28544039-28544119)
chr2 (873-950)||(45376200-45376284)
chr2 (861-928)||(7438563-7438632)
chr2 (873-937)||(24727586-24727653)
chr2 (864-929)||(29168723-29168791)
chr2 (890-950)||(29472014-29472077)
chr2 (860-904)||(37731232-37731277)
chr2 (146-190)||(37072727-37072771)
chr2 (146-190)||(39548537-39548581)
chr2 (873-947)||(25507263-25507342)
chr2 (865-950)||(40106608-40106697)
chr2 (862-929)||(42141599-42141669)
chr2 (864-928)||(14871845-14871913)
chr2 (914-948)||(18423746-18423780)
chr2 (873-928)||(36587474-36587531)
chr2 (865-909)||(18510674-18510719)
chr2 (863-928)||(30831753-30831820)
chr2 (865-928)||(35589392-35589459)
chr2 (864-904)||(38821364-38821405)
[»] chr4 (24 HSPs)
chr4 (10-190)||(9551559-9551740)
chr4 (873-950)||(13140286-13140364)
chr4 (102-190)||(6385343-6385433)
chr4 (889-950)||(45652665-45652729)
chr4 (873-950)||(54222040-54222120)
chr4 (873-946)||(56215613-56215689)
chr4 (873-941)||(40293248-40293317)
chr4 (102-184)||(24687301-24687385)
chr4 (910-950)||(44121211-44121251)
chr4 (864-929)||(51255744-51255813)
chr4 (862-950)||(961272-961364)
chr4 (102-190)||(25573212-25573302)
chr4 (863-950)||(35206165-35206256)
chr4 (874-950)||(35748647-35748726)
chr4 (873-940)||(44925123-44925193)
chr4 (913-948)||(32058360-32058395)
chr4 (864-928)||(22819647-22819715)
chr4 (889-950)||(29963632-29963696)
chr4 (864-949)||(35661581-35661670)
chr4 (874-904)||(37060326-37060356)
chr4 (865-909)||(2004216-2004261)
chr4 (857-909)||(3316341-3316394)
chr4 (873-902)||(5386392-5386421)
chr4 (865-901)||(19473979-19474016)
[»] chr5 (21 HSPs)
chr5 (865-950)||(844035-844121)
chr5 (872-941)||(19645612-19645682)
chr5 (873-948)||(2629826-2629906)
chr5 (865-949)||(43057434-43057522)
chr5 (146-191)||(35915996-35916041)
chr5 (864-950)||(30838348-30838438)
chr5 (873-950)||(26754621-26754701)
chr5 (857-948)||(4800483-4800582)
chr5 (864-904)||(13089814-13089855)
chr5 (873-928)||(21155995-21156053)
chr5 (873-947)||(8728565-8728644)
chr5 (860-902)||(14206394-14206437)
chr5 (860-928)||(8675438-8675510)
chr5 (102-190)||(37857495-37857585)
chr5 (102-189)||(7183871-7183960)
chr5 (873-941)||(8681851-8681920)
chr5 (865-949)||(8897381-8897469)
chr5 (859-928)||(12891102-12891174)
chr5 (860-904)||(26791277-26791321)
chr5 (864-904)||(32872930-32872971)
chr5 (865-909)||(42446318-42446363)
[»] chr8 (33 HSPs)
chr8 (861-950)||(30170712-30170805)
chr8 (873-950)||(14127252-14127332)
chr8 (864-941)||(13592764-13592845)
chr8 (863-947)||(33605063-33605152)
chr8 (864-936)||(26629107-26629183)
chr8 (862-909)||(5771999-5772047)
chr8 (887-946)||(21467406-21467466)
chr8 (873-928)||(7598716-7598774)
chr8 (862-918)||(5771893-5771951)
chr8 (911-949)||(16585376-16585414)
chr8 (873-950)||(37379417-37379497)
chr8 (146-192)||(40246532-40246578)
chr8 (873-937)||(102432-102497)
chr8 (860-904)||(1068600-1068645)
chr8 (913-950)||(4721780-4721817)
chr8 (873-909)||(4671999-4672035)
chr8 (857-904)||(5601019-5601067)
chr8 (857-904)||(5639553-5639601)
chr8 (146-190)||(30652508-30652552)
chr8 (873-928)||(34018816-34018874)
chr8 (863-909)||(2730988-2731035)
chr8 (873-904)||(26026904-26026935)
chr8 (857-946)||(43066581-43066674)
chr8 (146-192)||(2523621-2523667)
chr8 (860-929)||(20895999-20896070)
chr8 (912-950)||(26509484-26509522)
chr8 (863-904)||(28772156-28772198)
chr8 (864-949)||(39021427-39021516)
chr8 (865-949)||(6161947-6162035)
chr8 (910-939)||(9199927-9199956)
chr8 (863-903)||(33107900-33107941)
chr8 (864-904)||(34435769-34435810)
chr8 (873-902)||(39211061-39211090)
[»] chr7 (25 HSPs)
chr7 (863-950)||(48395245-48395336)
chr7 (873-950)||(6892616-6892696)
chr7 (873-950)||(22588944-22589024)
chr7 (873-950)||(11503560-11503636)
chr7 (102-184)||(16932561-16932645)
chr7 (102-184)||(16937944-16938028)
chr7 (873-947)||(17909036-17909113)
chr7 (886-948)||(27306010-27306075)
chr7 (881-946)||(24957178-24957246)
chr7 (873-950)||(47925345-47925425)
chr7 (910-950)||(7212646-7212686)
chr7 (864-937)||(47448824-47448902)
chr7 (864-929)||(12007190-12007259)
chr7 (151-190)||(44140050-44140089)
chr7 (865-903)||(43081923-43081961)
chr7 (102-193)||(46345837-46345930)
chr7 (864-903)||(17002335-17002374)
chr7 (859-909)||(25192912-25192962)
chr7 (866-904)||(31445317-31445356)
chr7 (906-948)||(11813389-11813431)
chr7 (102-190)||(27334667-27334757)
chr7 (873-903)||(32777740-32777770)
chr7 (864-904)||(37352108-37352149)
chr7 (863-903)||(37392040-37392081)
chr7 (873-941)||(48314353-48314424)
[»] scaffold1625 (1 HSPs)
scaffold1625 (873-950)||(764-844)
[»] chr6 (17 HSPs)
chr6 (873-950)||(13093634-13093716)
chr6 (860-928)||(17551384-17551456)
chr6 (873-950)||(38604-38684)
chr6 (873-950)||(10840726-10840806)
chr6 (102-189)||(32557129-32557218)
chr6 (860-941)||(20029255-20029340)
chr6 (909-948)||(34019914-34019953)
chr6 (862-946)||(31204797-31204885)
chr6 (887-939)||(33683522-33683577)
chr6 (873-904)||(24900783-24900814)
chr6 (910-941)||(25109091-25109122)
chr6 (863-929)||(3339504-3339573)
chr6 (863-904)||(8505806-8505848)
chr6 (859-904)||(11635567-11635613)
chr6 (873-928)||(21506344-21506401)
chr6 (873-949)||(28982624-28982702)
chr6 (146-183)||(4338075-4338112)
[»] chr3 (25 HSPs)
chr3 (873-950)||(11323917-11323995)
chr3 (873-941)||(31143278-31143349)
chr3 (874-948)||(41442181-41442258)
chr3 (859-950)||(41448162-41448254)
chr3 (873-938)||(41850951-41851019)
chr3 (863-904)||(34627914-34627955)
chr3 (861-949)||(41717446-41717537)
chr3 (102-183)||(9639852-9639935)
chr3 (865-903)||(32362932-32362971)
chr3 (865-928)||(36869843-36869909)
chr3 (889-939)||(39284663-39284714)
chr3 (860-929)||(52939647-52939717)
chr3 (873-950)||(9326968-9327048)
chr3 (873-949)||(15927578-15927658)
chr3 (865-902)||(28700471-28700509)
chr3 (863-904)||(32146018-32146060)
chr3 (864-928)||(48405408-48405476)
chr3 (863-928)||(7220-7288)
chr3 (913-950)||(32622349-32622386)
chr3 (873-929)||(42357087-42357143)
chr3 (885-941)||(48335231-48335290)
chr3 (858-902)||(49761311-49761356)
chr3 (865-928)||(50206975-50207042)
chr3 (860-904)||(50559244-50559289)
chr3 (146-183)||(53595587-53595624)
[»] chr1 (25 HSPs)
chr1 (146-188)||(2741619-2741661)
chr1 (881-950)||(28501463-28501535)
chr1 (146-190)||(31528901-31528945)
chr1 (864-946)||(35883594-35883680)
chr1 (863-929)||(48983672-48983742)
chr1 (861-928)||(4213067-4213138)
chr1 (865-928)||(9566966-9567033)
chr1 (881-941)||(49902651-49902714)
chr1 (861-904)||(9987946-9987990)
chr1 (144-184)||(19216673-19216713)
chr1 (861-904)||(27742612-27742656)
chr1 (857-928)||(31378476-31378548)
chr1 (146-190)||(33097921-33097965)
chr1 (890-941)||(43891761-43891813)
chr1 (146-190)||(44261196-44261240)
chr1 (862-928)||(48858819-48858889)
chr1 (873-904)||(19947773-19947804)
chr1 (873-935)||(51231304-51231369)
chr1 (863-902)||(52576337-52576375)
chr1 (889-950)||(2279305-2279369)
chr1 (911-941)||(3904233-3904263)
chr1 (146-184)||(51800960-51800998)
chr1 (886-936)||(17777466-17777520)
chr1 (860-904)||(26159435-26159480)
chr1 (863-928)||(27352627-27352695)
[»] scaffold0178 (1 HSPs)
scaffold0178 (887-947)||(11539-11602)
[»] scaffold0085 (1 HSPs)
scaffold0085 (873-949)||(31284-31361)
[»] scaffold0074 (1 HSPs)
scaffold0074 (109-190)||(35759-35842)
[»] scaffold0012 (1 HSPs)
scaffold0012 (110-191)||(119880-119963)
[»] scaffold0049 (1 HSPs)
scaffold0049 (873-938)||(72166-72232)
[»] scaffold0034 (1 HSPs)
scaffold0034 (864-928)||(101911-101979)
[»] scaffold0009 (1 HSPs)
scaffold0009 (865-948)||(49337-49425)
[»] scaffold0067 (1 HSPs)
scaffold0067 (873-925)||(35531-35583)


Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 10 - 659
Target Start/End: Original strand, 28478118 - 28478768
Alignment:
Q  10 aagtttgtttccggtggtgttgatgatgagattgagattccggtggttatgagttgtttcccgtttggttcannnnnnnnnnnnnnnnnggaggtgtagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  28478118 aagtttgtttccggtggtgttgatgatgagattgagattccggtggttatgagttgtttcccgtttggttcattttgttttgttttgttggaggtgtagg 28478217  T
Q  110 aagcaatt-tgttgagctaccagttaatgggctaaacttatccagggtgcataaggattctttatgcatgataaccacaccccatcaaaatcacttaaaa 208  Q
    |||||||| ||||| |||||||||||||||| |  |||||| |||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||    
T  28478218 aagcaattatgttgggctaccagttaatgggttggacttatgcagggtgcataaagattccttatgcatgataaccacatcccgtcaaaatcacttaaaa 28478317  T
Q  209 taccaacgacgaccgatatcgtcccttacacgtagaagctcaattgtaattttgttctcacgcgtgagataccgacctgattggtgttagttctacaata 308  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||| |    
T  28478318 taccaacgacggccgatatcgtcccttacacgtagaagctcaattgtaattttgttctcatgtgtgagataccgacttgattggtgttagttatacaaaa 28478417  T
Q  309 acaaagaaaaggtaaaatgagctgagtttttatacacctgtgttcattttttcctnnnnnnngttaactactttcaattagcatgttgtgtctcactcat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  28478418 acaaagaaaaggtaaaatgagctgagtttttatacacctgtgttcattttttccgaaaaaaagttaactactttcaattagcatgttgtgtctcactcat 28478517  T
Q  409 tagaatgaggaacattttgagtttctacttatagcacaaatcgggagttgtctgatccacactagaatatgacaatattcaattgtaattctccgagtac 508  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28478518 tagaatgaggaacagtttgagtttctacttatagcacaaatcgggagttgtctgatccacactagaatatgacaatattcaattgtaattctctgagtac 28478617  T
Q  509 aatttgttgtattcctcaacatcttgcatcaaagaggcaagatggtttccctatttgagtttagagtccttggataatttccaacaatctaattgaatca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28478618 aatttgttgtattcctcaacatcttgcatcaaagaggcaagatggtttccctatttgagtttagagtgcttggataatttccaacaatctaattgaatca 28478717  T
Q  609 accctaatctccaaatctcatcctatttgccaagaagtagttccagaaacc 659  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28478718 accctaatctccaaatctcatcctatttgccaagaagtagttctagaaacc 28478768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 700 - 950
Target Start/End: Original strand, 28481616 - 28481867
Alignment:
Q  700 aagaaattttttaccaaatattaaatcctaagtcacaaatgttatgatacaatatttctagaactattatcattcgcacatttatcatatatcaaatatc 799  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  28481616 aagaatttttttaccaaatgttaaatccaaagtcacaaatgttatgatacaatatttctagaattattatcattcgcatatttatcctatatcaaatatc 28481715  T
Q  800 aaaagttaggggttaatagtcattcaacaaatgaattagttcatacattcgaaaacttataaaaaagagaaat-atatttgaacaaccattttttgacaa 898  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28481716 aaaagtta-gggttaatagtcattcaacacatgaattagttcatacattcgaaaacttataaaaaagagaaataatatttgaacaaccattttttgacaa 28481814  T
Q  899 cttttggaac-actctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28481815 cttttggaacaactctctctcatactcacatgtgtttttattctatctcttct 28481867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 511 - 659
Target Start/End: Original strand, 28492857 - 28493008
Alignment:
Q  511 tttgttgtattcctcaacatcttgcatcaaagaggcaagatggtttccctatttgagttt---agagtccttggataatttccaacaatctaattgaatc 607  Q
    ||||| |||||||||||| |||||||||||| |||||||||| ||||| |||||||||||   | |||  ||||||||||| |||||||||||||  |||    
T  28492857 tttgtagtattcctcaacgtcttgcatcaaataggcaagatgatttccttatttgagtttttaaaagtgtttggataattttcaacaatctaattatatc 28492956  T
Q  608 aaccctaatctccaaatctcatcctatttgccaagaagtagttccagaaacc 659  Q
    |||||||||||||||||||| || ||||||| |||||||| |||||||||||    
T  28492957 aaccctaatctccaaatctcctcttatttgcgaagaagtaattccagaaacc 28493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 708 - 864
Target Start/End: Original strand, 28493085 - 28493240
Alignment:
Q  708 ttttaccaaatattaaatcctaagtcacaaatgttatgatacaatatttctagaactattatcattcgcacatttatcatatatcaaatatcaaaagtta 807  Q
    ||||||| ||| ||||||||||| |||||||||| || |||||||||||||| |||||||| |||||  ||||||||| || |||||||||||||| |||    
T  28493085 ttttaccgaatgttaaatcctaaatcacaaatgtgatcatacaatatttctataactattaccattcatacatttatcttagatcaaatatcaaaattta 28493184  T
Q  808 ggggttaatagtcattcaacaaatgaattagttcatacattcgaaaacttataaaaa 864  Q
     |||||||||||| ||||||| |||||||  || || ||||||||||| ||||||||    
T  28493185 -gggttaatagtcgttcaacacatgaattgatttatgcattcgaaaacgtataaaaa 28493240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 28492744 - 28492838
Alignment:
Q  371 gttaactactttcaattagcatgttgtgtctcactcattagaatgaggaacattttgagtttctacttatagcacaaatcgggagttgtctgatc 465  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||| ||||||||    
T  28492744 gttaactactttcaattagcatgtcgtgtctcactcattagaatgaggaacattttgagtttctacctacaacacaaatcaggagtcgtctgatc 28492838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 28492305 - 28492395
Alignment:
Q  254 gtaattttgttctcacgcgtgagataccgacctgattggtgttagttctacaataacaaagaaaaggtaaaatgagctgagtttttatacac 345  Q
    ||||||||||||||| | |||||| || ||| ||||||||||||||||   || |||||| |||||||||||||||||||||||||||||||    
T  28492305 gtaattttgttctcatgagtgagacac-gacttgattggtgttagttcagaaaaaacaaacaaaaggtaaaatgagctgagtttttatacac 28492395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 861 - 948
Target Start/End: Original strand, 22966781 - 22966872
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||||||||| ||||||| ||||||| ||||||| |||||||| ||||   |||||||||||| ||||||||||||||||||| ||||||    
T  22966781 aaaaagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcatattcacatgtgtttttattctctctctt 22966872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 31629612 - 31629692
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||| | |||||||||||||||||||||    ||||||| ||||||||||||||||||||||| ||||||||    
T  31629612 atatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacatgtgtttttattctctctcttct 31629692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 873 - 936
Target Start/End: Complemental strand, 15123999 - 15123933
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgttttt 936  Q
    ||||||| |||||||||||||||||||||||| |||| ||   ||||||||||||||||||||||||    
T  15123999 atatttgtacaaccattttttgacaacttttgaaacaatcatatctctcatactcacatgtgttttt 15123933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 865 - 946
Target Start/End: Complemental strand, 13454027 - 13453942
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctc 946  Q
    |||||||| |||| || |||| || |||||||||||||||| ||||   |||||||||||||||||||||||||||||||| ||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacatgtgtttttattctctctc 13453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 865 - 941
Target Start/End: Complemental strand, 31227622 - 31227544
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattct 941  Q
    |||||||| |||| || |||| || |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaactctctctcatactcacatgtttttttattct 31227544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 36635840 - 36635750
Alignment:
Q  103 gtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggatt-ctttatgcatgataaccacaccc 190  Q
    ||||| ||||||||| ||||| |||||| ||||||||||| | | |||| || |||||||||||||| |||||||||||||||||||||||    
T  36635840 gtgtatgaagcaattatgttgggctaccggttaatgggctgagatttatgcacggtgcataaggatttctttatgcatgataaccacaccc 36635750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 881 - 941
Target Start/End: Complemental strand, 15610887 - 15610824
Alignment:
Q  881 acaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattct 941  Q
    |||||||||||||||||||||||| ||||   |||||| |||||||||||||| ||||||||||    
T  15610887 acaaccattttttgacaacttttgaaacaaccctctctatcatactcacatgtttttttattct 15610824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 950
Target Start/End: Original strand, 9979094 - 9979184
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||||| ||||||| ||||||| ||||| |||| |||||  |||    ||||||||||||||||||||||||||||||| ||||||||    
T  9979094 aagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactcacatgtgtttttattctctctcttct 9979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 24024039 - 24023956
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataac 183  Q
    |||||| ||||||||| ||||| ||||||||||||||||||   | |||| |||||||||||||||| | ||||||||||||||    
T  24024039 ggtgtaagaagcaattatgttgggctaccagttaatgggctgtgatttatgcagggtgcataaggatgccttatgcatgataac 24023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 28544039 - 28544119
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| || |||||||||| ||||||||||  |||    |||||||||| |||||||||||||||||||| ||||||||    
T  28544039 atatttgtactaccattttttcacaacttttgtgacaaccatctctctcattctcacatgtgtttttattctctctcttct 28544119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 45376284 - 45376200
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-------ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| ||||||||||||||||  |||       ||||||||||||||||||||| ||||| |||||||||||||    
T  45376284 atatttgtacaaccactttttgacaacttttgtgacaaccctctctctctctcatactcacatgtatttttgttctatctcttct 45376200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 928
Target Start/End: Original strand, 7438563 - 7438632
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaactttt-ggaacactctctctcatactcacat 928  Q
    |||||||||||| ||||||||||||||||||||  |||||||||  ||  ||||||||||||||||||||    
T  7438563 aaaaagagaaatgatatttgaacaaccatttttaaacaacttttatgacaactctctctcatactcacat 7438632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 873 - 937
Target Start/End: Complemental strand, 24727653 - 24727586
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacatgtgttttta 937  Q
    ||||||| ||||||| ||||||||||||||||    |||||||||||||||| |||||| ||||||||    
T  24727653 atatttgtacaaccactttttgacaacttttgaaacaacactctctctcatattcacatatgttttta 24727586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 929
Target Start/End: Original strand, 29168723 - 29168791
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg--gaacactctctctcatactcacatg 929  Q
    ||||||||| ||||||| ||||||||||||||||||||||||   |||  |||||||||||||||||||    
T  29168723 aagagaaatgatatttgtacaaccattttttgacaacttttgcacaactttctctctcatactcacatg 29168791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 890 - 950
Target Start/End: Complemental strand, 29472077 - 29472014
Alignment:
Q  890 ttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||    
T  29472077 ttttgacaacttttgaaacaaccccctctctcatactcacatgtgtttttattctctatcttct 29472014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 860 - 904
Target Start/End: Complemental strand, 37731277 - 37731232
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  37731277 aaaaaagagaaatgatatttgaacaaccactttttgacaacttttg 37731232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 37072727 - 37072771
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||    
T  37072727 ttatgcagggtgcataaggattccttatgcatgataaccgcaccc 37072771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 39548537 - 39548581
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||    
T  39548537 ttatgcagggtgcataaggattccttatgcatgataaccgcaccc 39548581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 947
Target Start/End: Original strand, 25507263 - 25507342
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-----ctctctctcatactcacatgtgtttttattctatctct 947  Q
    ||||||| ||||||| |||||||||||||||| ||||     ||||||||| |||||||||||  ||||||||| |||||    
T  25507263 atatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctctctct 25507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 950
Target Start/End: Original strand, 40106608 - 40106697
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||| ||||||| ||||||| | ||||||||||| || ||||    ||||||||||||| ||||| ||||||||||| ||||||||    
T  40106608 agagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccatctctctcatacttacatgcgtttttattctctctcttct 40106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 929
Target Start/End: Complemental strand, 42141669 - 42141599
Alignment:
Q  862 aaaagagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacatg 929  Q
    ||||||||||| |||| || ||||||||||||| |||||||||||  |||  |||||||||||||||||||    
T  42141669 aaaagagaaatgatatatgtacaaccattttttcacaacttttggacaactttctctctcatactcacatg 42141599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 928
Target Start/End: Original strand, 14871845 - 14871913
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||| |||| |||||||||||||||||||||||||||  |||    ||||||||||||||||||    
T  14871845 aagagaaatgatatgtgaacaaccattttttgacaacttttgtgacagctttctctctcatactcacat 14871913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 914 - 948
Target Start/End: Complemental strand, 18423780 - 18423746
Alignment:
Q  914 ctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||||||||||||||||||||||||| ||||||    
T  18423780 ctctcatactcacatgtgtttttattctctctctt 18423746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 928
Target Start/End: Complemental strand, 36587531 - 36587474
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacat 928  Q
    |||||||||||||||||||||||||| |||| |  |||  ||||||||||||||||||    
T  36587531 atatttgaacaaccattttttgacaattttttgacaactttctctctcatactcacat 36587474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 909
Target Start/End: Original strand, 18510674 - 18510719
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||    
T  18510674 agagaaatgatatttgaacaactattttttgacaacttttgcaaca 18510719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 928
Target Start/End: Original strand, 30831753 - 30831820
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttggaaca--ctctctctcatactcacat 928  Q
    |||||||||| ||||||||||||||| ||||||||||||||||  |||   ||||||||||||||||||    
T  30831753 aaagagaaattatatttgaacaacca-tttttgacaacttttgtcacaacttctctctcatactcacat 30831820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 928
Target Start/End: Complemental strand, 35589459 - 35589392
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    |||||||| ||||||||||| ||||||| |||||||||||| ||||    ||||||||||||||||||    
T  35589459 agagaaatgatatttgaacatccattttgtgacaacttttgcaacaattttctctctcatactcacat 35589392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 904
Target Start/End: Original strand, 38821364 - 38821405
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  38821364 aagagaaatgatatttgaacaaccattttatgacaacttttg 38821405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 9551740 - 9551559
Alignment:
Q  10 aagtttgtttccggtggtgttgatgatgagattgagattccggtggttatgagttgtttcccgtttggttcannnnnnnnnnnnnnnnnggaggtgtagg 109  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||                 || ||||||||    
T  9551740 aagtttgttttcggtggtgttgatgatgagatttagattccggtggttatgagttgtttcatgtttggttcattttgttttggttttttgggggtgtagg 9551641  T
Q  110 aagcaatt-tgttgagctaccagttaatgggctaaacttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||||| ||||| |||||||||||||| |||  |||||| |||||||||||||||||| |||||||||||||||||||||    
T  9551640 aagcaattatgttgggctaccagttaatgagctggacttatgcagggtgcataaggattccttatgcatgataaccacaccc 9551559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 13140364 - 13140286
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  13140364 atatttgtacatctattttttgacaacttttgaaacaactctctctcatactcacatgtgtttttattctctctcttct 13140286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 6385433 - 6385343
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||| ||||||||| ||||| |||||| |||||||||||   |||||| |||||||||||||||||| |||| ||||||||||||||||    
T  6385433 ggtgtatgaagcaattatgttgggctaccggttaatgggctgtgacttatgcagggtgcataaggattccttatacatgataaccacaccc 6385343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 889 - 950
Target Start/End: Original strand, 45652665 - 45652729
Alignment:
Q  889 tttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||| ||||   |||| ||||||||||||||||||||||||||| ||||||||    
T  45652665 tttttgacaacttttgaaacaaacctctatctcatactcacatgtgtttttattctctctcttct 45652729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 54222120 - 54222040
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||   ||||||||||||||||||| |||||||||  |||||||    
T  54222120 atatttgtacaaccactttttaacaacttttggaacaatcatgtctctcatactcacatgtgcttttattctccctcttct 54222040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 946
Target Start/End: Original strand, 56215613 - 56215689
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctc 946  Q
    ||||||| ||||||| |||||||||||||||| | ||    ||||||||||||||||||||||||||||||| ||||    
T  56215613 atatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacatgtgtttttattctctctc 56215689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 873 - 941
Target Start/End: Original strand, 40293248 - 40293317
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattct 941  Q
    ||||||| ||| | |||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||    
T  40293248 atatttgtacatcaattttttgacaatttttgaaacaaccctctctcatactcacatgtgtttttattct 40293317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 24687301 - 24687385
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataacc 184  Q
    |||||||||||||||| || || |||||| ||||||||||| | |||||| || | ||||||||||||| |||||||||||||||    
T  24687301 ggtgtaggaagcaattatgatgggctaccggttaatgggctgagacttatgcatgatgcataaggattccttatgcatgataacc 24687385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 910 - 950
Target Start/End: Complemental strand, 44121251 - 44121211
Alignment:
Q  910 ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  44121251 ctctctctcatactcacatgtgtttttattctctctcttct 44121211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 864 - 929
Target Start/End: Original strand, 51255744 - 51255813
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacatg 929  Q
    ||||||||| ||||||||||||||||||||||||||||||||    |||  |||||||||||||||||||    
T  51255744 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacatg 51255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 950
Target Start/End: Original strand, 961272 - 961364
Alignment:
Q  862 aaaagagaaata-tatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||| |||||| ||||  ||||||||| |||||||| ||||   ||||||||||||||||||||| |||| ||| | ||||||||    
T  961272 aaaagagaaataatatttgtacaataattttttgataacttttgaaacaactctctctctcatactcacatgttttttcattatctctcttct 961364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 25573302 - 25573212
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||| ||||||||| ||||| |||||| |||||||||||   | |||| |||||||||||| ||||| ||||||||||||||| |||||    
T  25573302 ggtgtacgaagcaattatgttgggctaccggttaatgggctgggatttatgcagggtgcataaagattccttatgcatgataaccgcaccc 25573212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 950
Target Start/End: Original strand, 35206165 - 35206256
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||| || |||| |||| || ||||||| |||||||| ||||   |||||||| ||||||||||||||||||||||| ||| ||||    
T  35206165 aaagagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacatgtgtttttattctctctattct 35206256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 874 - 950
Target Start/End: Complemental strand, 35748726 - 35748647
Alignment:
Q  874 tatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||| ||||| | ||||||| || |||||||||| ||   ||||||||||||| ||||||||||||||| ||||||||    
T  35748726 tatttgcacaactactttttgataatttttggaacaatcatatctctcatactcagatgtgtttttattctctctcttct 35748647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 940
Target Start/End: Complemental strand, 44925193 - 44925123
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttgga---acactctctctcatactcacatgtgtttttattc 940  Q
    ||||||||||||||| ||||||||||||||| ||   || |||| | |||| |||||||||||||||||||    
T  44925193 atatttgaacaaccactttttgacaacttttagaacgaccctctttttcattctcacatgtgtttttattc 44925123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 948
Target Start/End: Complemental strand, 32058395 - 32058360
Alignment:
Q  913 tctctcatactcacatgtgtttttattctatctctt 948  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32058395 tctctcatactcacatgtgtttttattctctctctt 32058360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 928
Target Start/End: Original strand, 22819647 - 22819715
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||| ||||||||||| ||||||| |||||||||||| ||||    ||||||||||||||||||    
T  22819647 aagagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacat 22819715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 889 - 950
Target Start/End: Original strand, 29963632 - 29963696
Alignment:
Q  889 tttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||| |||| ||   ||||| |||||||||| |||||||||||| ||||||||    
T  29963632 tttttgacaacttttgaaacaatcatctctcttatactcacatttgtttttattctctctcttct 29963696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 949
Target Start/End: Complemental strand, 35661670 - 35661581
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttgga--acactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    ||||||||| ||||||| ||||||||||| |||||| |||| ||  ||||| ||||||||||||||| | ||||||||| || |||||||    
T  35661670 aagagaaatgatatttgtacaaccattttatgacaatttttagacaacactttctctcatactcacattatgtttttatcctctctcttc 35661581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 874 - 904
Target Start/End: Original strand, 37060326 - 37060356
Alignment:
Q  874 tatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||||||||||||||||||||||||    
T  37060326 tatttgaacaaccattttttgacaacttttg 37060356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 909
Target Start/End: Complemental strand, 2004261 - 2004216
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||    
T  2004261 agagaaatgatatttgaacaaccattttttaacaacttttgcaaca 2004216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 909
Target Start/End: Original strand, 3316341 - 3316394
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||| ||||||||||| || |||||| |||||||||||||||||||||| ||||    
T  3316341 tatataaaagagaaatgatttttgaataaccattttttgacaacttttgtaaca 3316394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 902
Target Start/End: Original strand, 5386392 - 5386421
Alignment:
Q  873 atatttgaacaaccattttttgacaacttt 902  Q
    ||||||||||||||||||||||||||||||    
T  5386392 atatttgaacaaccattttttgacaacttt 5386421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 19474016 - 19473979
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaactt 901  Q
    |||||||| |||||||||||||||||||||||||||||    
T  19474016 agagaaatgatatttgaacaaccattttttgacaactt 19473979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 865 - 950
Target Start/End: Original strand, 844035 - 844121
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaacactctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||| ||||||||    
T  844035 agagaaatgatatttgcacaaccattttttgacaacttttgaaacaatctctctcatattcacatgtgtatttattctctctcttct 844121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 872 - 941
Target Start/End: Complemental strand, 19645682 - 19645612
Alignment:
Q  872 tatatttgaacaaccattttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattct 941  Q
    |||||||| ||||| || ||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  19645682 tatatttgtacaactatattttgacaacttttgcaataactctctctcatactcacatgtgtttttattct 19645612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 873 - 948
Target Start/End: Original strand, 2629826 - 2629906
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-----ctctctctcatactcacatgtgtttttattctatctctt 948  Q
    ||||||| |||||||||||||||||||||||| ||||     |||||||||||| |||||||| |||||||||| ||||||    
T  2629826 atatttgtacaaccattttttgacaacttttgaaacaaccttctctctctcatattcacatgtttttttattctctctctt 2629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 865 - 949
Target Start/End: Original strand, 43057434 - 43057522
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacatgtgtttttattctatctcttc 949  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    ||| | ||||||||||||||||| |||||||||||| |||||||    
T  43057434 agagaaatgatatttgtacaaccactttttgacaacttttgaaataactccctctctcatactcacatatgtttttattctctctcttc 43057522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 35915996 - 35916041
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacacccc 191  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  35915996 ttatgcagggtgcataaggattccttatgcatgataaccacacccc 35916041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 950
Target Start/End: Complemental strand, 30838438 - 30838348
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||||| ||||||| ||| | | |||||||||||||||| ||||    ||||||||||||||||||||||||||||||| || |||||    
T  30838438 aagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctctcccttct 30838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 26754701 - 26754621
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||||||  ||||||||||||| |  |||   |||||||||||||||||||||||||||||||| ||| ||||    
T  26754701 atatttgtacaaccaaattttgacaactttggagacaaccctctctctcatactcacatgtgtttttattctctctattct 26754621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 948
Target Start/End: Complemental strand, 4800582 - 4800483
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca-------ctctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||| | ||||||| ||||||  ||||| | |||||||||||||||||||||       |||||||||||||||| ||||||||||||||| ||||||    
T  4800582 tataaatacgagaaatgatatttatacaactactttttgacaacttttggaacaactctctctctctctcatactcatatgtgtttttattctctctctt 4800483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 904
Target Start/End: Complemental strand, 13089855 - 13089814
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  13089855 aagagaaatgatatttgaacaaccattttttgacaacttttg 13089814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 928
Target Start/End: Original strand, 21155995 - 21156053
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacat 928  Q
    ||||||||||||||||||||||||||||||||  ||||   ||||| ||||||||||||    
T  21155995 atatttgaacaaccattttttgacaacttttgtgacacctttctctttcatactcacat 21156053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 947
Target Start/End: Complemental strand, 8728644 - 8728565
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-----ctctctctcatactcacatgtgtttttattctatctct 947  Q
    ||||||| ||||||| |||||||||||||||| ||||     ||||||||| |||||||||||  ||||||||| |||||    
T  8728644 atatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctctctct 8728565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 902
Target Start/End: Original strand, 14206394 - 14206437
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttt 902  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  14206394 aaaaaagagaaatgatatttgtacaaccattttttgacaacttt 14206437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 860 - 928
Target Start/End: Complemental strand, 8675510 - 8675438
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||||||| ||||||||||| ||||||| ||| |||||||| ||||    ||||||||||||||||||    
T  8675510 aaaaaagagaaatgatatttgaacatccattttgtgataacttttgcaacaattttctctctcatactcacat 8675438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 37857495 - 37857585
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||| ||| ||||| ||||| |||||| |||||||||||   | |||| |||||||||||||||| | ||||||||||||||| |||||    
T  37857495 ggtgtatgaaacaattatgttgggctaccggttaatgggctgggatttatgcagggtgcataaggatgccttatgcatgataaccgcaccc 37857585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 7183871 - 7183960
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacacc 189  Q
    |||||| ||||||||| ||||  |||||| ||||||||||| | | |||| ||||||||||||||||   ||||||||||||||| ||||    
T  7183871 ggtgtacgaagcaattatgttaggctacctgttaatgggctgagatttatgcagggtgcataaggatgtcttatgcatgataaccgcacc 7183960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 941
Target Start/End: Original strand, 8681851 - 8681920
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactc-tctctcatactcacatgtgtttttattct 941  Q
    ||||||| |||| |||||||||| || ||||||||||  | ||| | |||||||||||||||||||||||    
T  8681851 atatttgtacaatcattttttgataatttttggaacaaacctcttttatactcacatgtgtttttattct 8681920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 949
Target Start/End: Original strand, 8897381 - 8897469
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    |||||||| ||||||| ||||||||||| ||||||| ||| |  ||| |||||| ||||||||||| | |||||||||||| |||||||    
T  8897381 agagaaatgatatttgtacaaccattttatgacaaccttttgacaactctctctttcatactcacattatgtttttattctttctcttc 8897469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 859 - 928
Target Start/End: Complemental strand, 12891174 - 12891102
Alignment:
Q  859 taaaaaagagaaat-atatttgaacaaccattttttgacaacttttg--gaacactctctctcatactcacat 928  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||   |||| ||||||||||| ||||||    
T  12891174 taaaaaagagaaatgatatttgtacaaccatttttgcacaacttttgtacaacattctctctcatattcacat 12891102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 860 - 904
Target Start/End: Complemental strand, 26791321 - 26791277
Alignment:
Q  860 aaaaaagagaaata-tatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  26791321 aaaaaagagaaataatatttgaacaaccatttttt-acaacttttg 26791277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 904
Target Start/End: Complemental strand, 32872971 - 32872930
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  32872971 aagagaaatgatatttgaacaactattttttgacaacttttg 32872930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 909
Target Start/End: Complemental strand, 42446363 - 42446318
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||    
T  42446363 agagaaatgatatttgaacaactattttttgacaacttttgcaaca 42446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 861 - 950
Target Start/End: Complemental strand, 30170805 - 30170712
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||| ||||    ||||||||||||||||||||||||||||||| ||||||||    
T  30170805 aaaaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctctctcttct 30170712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 14127252 - 14127332
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| |||||||||| ||||||||||    ||||||||||||||||||||||||| ||||| ||||||||    
T  14127252 atatttgtacaaccactttttgacaatttttggaacaaccatctctctcatactcacatgtgttttaattctctctcttct 14127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 864 - 941
Target Start/End: Original strand, 13592764 - 13592845
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattct 941  Q
    ||||||||| ||||||| ||| | |||||||||||||||||| ||||   || |||||||||||||||||||||||||||||    
T  13592764 aagagaaatgatatttgtacacctattttttgacaacttttgaaacaactctatctctcatactcacatgtgtttttattct 13592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 947
Target Start/End: Complemental strand, 33605152 - 33605063
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcaca-tgtgtttttattctatctct 947  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||    ||||||||||||||||| |||||||||| ||| |||||    
T  33605152 aaagagaaatgatatttgaacaaccattttatgataacttttggaacaattttctctctcatactcacattgtgtttttactctctctct 33605063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 864 - 936
Target Start/End: Complemental strand, 26629183 - 26629107
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgttttt 936  Q
    ||||||||| ||||||| ||||||| |||||||||||||||| ||||   ||||||||||||||||||||| |||||    
T  26629183 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactcacatgttttttt 26629107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 862 - 909
Target Start/End: Complemental strand, 5772047 - 5771999
Alignment:
Q  862 aaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  5772047 aaaagagaaatgatatttgaacaaccattttttgacaacttttgtaaca 5771999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 887 - 946
Target Start/End: Original strand, 21467406 - 21467466
Alignment:
Q  887 attttttgacaacttttggaacactc-tctctcatactcacatgtgtttttattctatctc 946  Q
    |||||||||||||||||  |||| || ||||||||||||||||||||||||||||| ||||    
T  21467406 attttttgacaacttttaaaacaatcatctctcatactcacatgtgtttttattctctctc 21467466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 873 - 928
Target Start/End: Original strand, 7598716 - 7598774
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg-gaacac--tctctctcatactcacat 928  Q
    |||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||    
T  7598716 atatttgaacaaccattttttgacaacttttgtgaccactttctctctcatactcacat 7598774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 918
Target Start/End: Complemental strand, 5771951 - 5771893
Alignment:
Q  862 aaaagagaaat-atatttgaacaaccattttttgacaacttttggaac-actctctctc 918  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  5771951 aaaagagaaatgatatttgaacaaccattttgtgacaacttttgtaacaactctctctc 5771893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 911 - 949
Target Start/End: Complemental strand, 16585414 - 16585376
Alignment:
Q  911 tctctctcatactcacatgtgtttttattctatctcttc 949  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  16585414 tctctctcatactcacatgtgtttttattctctctcttc 16585376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 37379497 - 37379417
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| | ||||| |||||||||||||||| ||||    ||||||||||||||||||||| |||||||||  |||||||    
T  37379497 atatttgtagaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgcttttattctccctcttct 37379417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 40246578 - 40246532
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacacccca 192  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||    
T  40246578 ttatgcagggtgcataaggattccttatgcatgataaccgcacccca 40246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 873 - 937
Target Start/End: Complemental strand, 102497 - 102432
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactctctctcatactcaca-tgtgttttta 937  Q
    ||||||||||||||||||| ||||||||||||||  | | ||||||||||||| | ||||||||||    
T  102497 atatttgaacaaccattttgtgacaacttttggacaaatttctctcatactcagattgtgttttta 102432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 860 - 904
Target Start/End: Original strand, 1068600 - 1068645
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  1068600 aaaaaagagaaatgatatttgaacaaccactttttgacaacttttg 1068645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 913 - 950
Target Start/End: Original strand, 4721780 - 4721817
Alignment:
Q  913 tctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  4721780 tctctcatactcacatgtgtttttattctctctcttct 4721817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 909
Target Start/End: Original strand, 4671999 - 4672035
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4671999 atatttgaacaaccattttttgacaacttttgcaaca 4672035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 857 - 904
Target Start/End: Complemental strand, 5601067 - 5601019
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  5601067 tatacaaatgagaaatgatatttgaacaaccattttttgacaacttttg 5601019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 857 - 904
Target Start/End: Original strand, 5639553 - 5639601
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  5639553 tatacaaatgagaaatgatatttgaacaaccattttttgacaacttttg 5639601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 30652508 - 30652552
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||    
T  30652508 ttatgcagggtgcataagaattccttatgcatgataaccacaccc 30652552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 928
Target Start/End: Original strand, 34018816 - 34018874
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||||||||||||| |||||||||||| ||||    ||||||||||||||||||    
T  34018816 atatttgaacaaccattttctgacaacttttgcaacaattttctctctcatactcacat 34018874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 909
Target Start/End: Complemental strand, 2731035 - 2730988
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  2731035 aaagagaaatgatatttgaacaaccactttttgacaacttttgtaaca 2730988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 904
Target Start/End: Original strand, 26026904 - 26026935
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||||||||||||||||||||||    
T  26026904 atatttgaacaaccattttttgacaacttttg 26026935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 946
Target Start/End: Complemental strand, 43066674 - 43066581
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattctatctc 946  Q
    |||||| ||||||||| ||||||| ||||||| ||||| |||||||||| |||| ||   |||||||||  || ||||||||||||||| ||||    
T  43066674 tataaataagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctctcatatccatatgtgtttttattctctctc 43066581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 2523621 - 2523667
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacacccca 192  Q
    |||| |||| ||||||||||||| ||||||||||||||| |||||||    
T  2523621 ttatgcaggatgcataaggattccttatgcatgataaccgcacccca 2523667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 860 - 929
Target Start/End: Complemental strand, 20896070 - 20895999
Alignment:
Q  860 aaaaaagagaaatatatttgaacaaccattttttgacaacttttgg---aacactctctctcatactcacatg 929  Q
    ||||| |||||||||||||| ||||||||||| |||||| ||||||   |||  |||||||||||||||||||    
T  20896070 aaaaaggagaaatatatttgtacaaccattttgtgacaa-ttttggtacaactttctctctcatactcacatg 20895999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 912 - 950
Target Start/End: Original strand, 26509484 - 26509522
Alignment:
Q  912 ctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  26509484 ctctctcatactcacatgtgtttttattttctctcttct 26509522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 28772198 - 28772156
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  28772198 aaagagaaatgatatttgaacaaccattttttgacaatttttg 28772156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 949
Target Start/End: Complemental strand, 39021516 - 39021427
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| |  ||| |||||| ||||||||||| | |||||||||||| |||||||    
T  39021516 aagagaaatgatatttgtacaaccattttgtgataactttttgacaactctctctttcatactcacattatgtttttattctctctcttc 39021427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 949
Target Start/End: Original strand, 6161947 - 6162035
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    |||||||| ||||||| ||||||||||| ||||||| ||| |  ||| |||||| ||||||||||| | |||||||||||| |||||||    
T  6161947 agagaaatgatatttgtacaaccattttatgacaaccttttgacaactctctctttcatactcacattatgtttttattctctctcttc 6162035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 910 - 939
Target Start/End: Complemental strand, 9199956 - 9199927
Alignment:
Q  910 ctctctctcatactcacatgtgtttttatt 939  Q
    ||||||||||||||||||||||||||||||    
T  9199956 ctctctctcatactcacatgtgtttttatt 9199927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 903
Target Start/End: Complemental strand, 33107941 - 33107900
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaactttt 903  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  33107941 aaagagaaatgatatttgaacaaccactttttgacaactttt 33107900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 904
Target Start/End: Complemental strand, 34435810 - 34435769
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  34435810 aagagaaatgatatttgaacaaccactttttgacaacttttg 34435769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 902
Target Start/End: Original strand, 39211061 - 39211090
Alignment:
Q  873 atatttgaacaaccattttttgacaacttt 902  Q
    ||||||||||||||||||||||||||||||    
T  39211061 atatttgaacaaccattttttgacaacttt 39211090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 863 - 950
Target Start/End: Original strand, 48395245 - 48395336
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| ||||   |||||||| |||||||||| |||||||||||| ||||||||    
T  48395245 aaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatgtttttattctctctcttct 48395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 6892696 - 6892616
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| | ||||||||||| || ||||   |||||||||||||||||||||||||||||||| ||||||||    
T  6892696 atatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacatgtgtttttattctctctcttct 6892616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 22589024 - 22588944
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||||||||||||||||||||||| ||||   | |||||||||||||||||||| ||||||| | ||||||||    
T  22589024 atatttgtacaaccattttttgacaacttttgaaacaaccccctctctcatactcacatgtgcttttattatctctcttct 22588944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 11503636 - 11503560
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||||||  |||||||||||| |||||||  |||||||||||||||||| ||||||||||| ||||||||    
T  11503636 atatttgtacaaccacattttgacaacttatggaacaa-ctctctcatactcacatgcgtttttattctctctcttct 11503560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 16932561 - 16932645
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataacc 184  Q
    |||||||||||||||| ||||| |||||| ||||||||| | | |||||| ||| |||||||||||||| |||||||||||||||    
T  16932561 ggtgtaggaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataaggattccttatgcatgataacc 16932645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 16937944 - 16938028
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataacc 184  Q
    |||||||||||||||| ||||| |||||| ||||||||| | | |||||| ||| |||||||||||||| |||||||||||||||    
T  16937944 ggtgtaggaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataaggattccttatgcatgataacc 16938028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 873 - 947
Target Start/End: Complemental strand, 17909113 - 17909036
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctct 947  Q
    ||||||| |||| ||||||||||||||||||| || |   ||||||||| |||||||||||||||||||||| |||||    
T  17909113 atatttgtacaatcattttttgacaacttttgaaataaccctctctctcgtactcacatgtgtttttattctctctct 17909036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 886 - 948
Target Start/End: Complemental strand, 27306075 - 27306010
Alignment:
Q  886 cattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||| |||||||||||||| ||||   |||||||||||||||||||||||||||||||| ||||||    
T  27306075 cattctttgacaacttttgaaacaatcctctctctcatactcacatgtgtttttattctctctctt 27306010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 881 - 946
Target Start/End: Complemental strand, 24957246 - 24957178
Alignment:
Q  881 acaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctc 946  Q
    ||||||| |||||||||| |||||| |||   |||||||||||||||||||||||||||||||| ||||    
T  24957246 acaaccactttttgacaatttttggcacaaccctctctctcatactcacatgtgtttttattctctctc 24957178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 47925345 - 47925425
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| | ||| |||||||||||||||   |||||||||||||||||||||||||| ||||| | ||||||    
T  47925345 atatttgtacaaccactctttaacaacttttggaacaaccctctctctcatactcacatgtgttttaattctctatcttct 47925425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 910 - 950
Target Start/End: Complemental strand, 7212686 - 7212646
Alignment:
Q  910 ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  7212686 ctctctctcatactcacatgtgtttttattctctctcttct 7212646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 937
Target Start/End: Original strand, 47448824 - 47448902
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcaca-tgtgttttta 937  Q
    ||||||||| ||||||||||||||||||||||||||||||||    |||  ||||||||||||||||| ||||||||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgtgttttta 47448902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 864 - 929
Target Start/End: Complemental strand, 12007259 - 12007190
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacatg 929  Q
    ||||||||| ||||||||||||||||||||||||||||||||    |||  |||||||||||||||||||    
T  12007259 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacatg 12007190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 44140089 - 44140050
Alignment:
Q  151 cagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  44140089 cagggtgcataaggattccttatgcatgataaccacaccc 44140050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 865 - 903
Target Start/End: Complemental strand, 43081961 - 43081923
Alignment:
Q  865 agagaaatatatttgaacaaccattttttgacaactttt 903  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  43081961 agagaaatatatttgaacaaccactttttgacaactttt 43081923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 46345930 - 46345837
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccccat 193  Q
    |||||||||||||||| ||||| |||||| ||||||  ||| | |||||| ||| |||||||||||||  ||||| ||||||||| ||||||||    
T  46345930 ggtgtaggaagcaattatgttgggctaccggttaataagctgagacttatgcagcgtgcataaggatttcttatgtatgataaccgcaccccat 46345837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 903
Target Start/End: Original strand, 17002335 - 17002374
Alignment:
Q  864 aagagaaatatatttgaacaaccattttttgacaactttt 903  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  17002335 aagagaaaaatatttgaacaaccattttttaacaactttt 17002374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 909
Target Start/End: Complemental strand, 25192962 - 25192912
Alignment:
Q  859 taaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca 909  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  25192962 taaaaaagagaaatgatatttgaacaaccatttttt-acaacttttgtaaca 25192912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 866 - 904
Target Start/End: Original strand, 31445317 - 31445356
Alignment:
Q  866 gagaaata-tatttgaacaaccattttttgacaacttttg 904  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  31445317 gagaaatagtatttgaacaaccattttttgacaacttttg 31445356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 906 - 948
Target Start/End: Original strand, 11813389 - 11813431
Alignment:
Q  906 aacactctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||| ||||||||||||||||||||||||||| | ||||||    
T  11813389 aacactttctctcatactcacatgtgtttttattttctctctt 11813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 27334757 - 27334667
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||||| ||||||||| ||||| ||||||  ||||||||||   |||||| ||||||||||||| |||| ||| ||||||||||| |||||    
T  27334757 ggtgtacgaagcaattatgttgggctaccgattaatgggctgggacttatgcagggtgcataagaattccttaagcatgataaccgcaccc 27334667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 903
Target Start/End: Complemental strand, 32777770 - 32777740
Alignment:
Q  873 atatttgaacaaccattttttgacaactttt 903  Q
    |||||||||||||||||||||||||||||||    
T  32777770 atatttgaacaaccattttttgacaactttt 32777740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 904
Target Start/End: Original strand, 37352108 - 37352149
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  37352108 aagagaaatgatatttgaacaaccattttttgacaatttttg 37352149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 903
Target Start/End: Original strand, 37392040 - 37392081
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaactttt 903  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  37392040 aaagagaaatgatatttgtacaaccattttttgacaactttt 37392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 941
Target Start/End: Complemental strand, 48314424 - 48314353
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattct 941  Q
    ||||||| ||||||| ||||| |||||||||  ||||   |||||||||||||| ||||| |||||||||||    
T  48314424 atatttgtacaaccactttttaacaacttttacaacaaccctctctctcatacttacatgagtttttattct 48314353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 844 - 764
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||| ||||||||||||||||||| ||||    ||||||||||||||||||||||||| ||||| ||||||||    
T  844 atatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacatgtgttttaattctctctcttct 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 13093634 - 13093716
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-----ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| |||||||||||||||| ||||     |||||||||||||||| ||||||||||||||| ||||||||    
T  13093634 atatttgtacaaccactttttgacaacttttgaaacaactctctctctctcatactcatatgtgtttttattctctctcttct 13093716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 860 - 928
Target Start/End: Complemental strand, 17551456 - 17551384
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||    ||||||||||||||||||    
T  17551456 aaaaaagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacat 17551384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 38604 - 38684
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||||||  ||||||||||||| | ||||   ||||||||||||||||||||| |||||||||| ||||||||    
T  38604 atatttgtacaaccaaattttgacaactttggaaacaaccctctctctcatactcacatgtatttttattctctctcttct 38684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 10840726 - 10840806
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||  |||||||||||||||||||||||   ||||||||||||||||| ||||| || ||||| ||||||||    
T  10840726 atatttgtacaattattttttgacaacttttggaacaatcctctctctcatactcacttgtgtattaattctctctcttct 10840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 32557129 - 32557218
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacacc 189  Q
    |||||| ||||||||| ||||| |||||| |||||||| || | | |||| |||||||||||||||| | ||||||||||||||||||||    
T  32557129 ggtgtacgaagcaattatgttgggctaccggttaatggactgagatttatgcagggtgcataaggataccttatgcatgataaccacacc 32557218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 860 - 941
Target Start/End: Original strand, 20029255 - 20029340
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattct 941  Q
    |||||||| |||| ||||||  ||||||| ||||| |||||||||| ||||    |||||||||||||||||||||||||||||||    
T  20029255 aaaaaagaaaaatgatatttatacaaccactttttaacaacttttgaaacaaccttctctctcatactcacatgtgtttttattct 20029340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 909 - 948
Target Start/End: Complemental strand, 34019953 - 34019914
Alignment:
Q  909 actctctctcatactcacatgtgtttttattctatctctt 948  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  34019953 actctctctcatactcacatgtgtttttattctctctctt 34019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 946
Target Start/End: Complemental strand, 31204885 - 31204797
Alignment:
Q  862 aaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctc 946  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| || |   |||||||||||| ||| ||||||||||||||| ||||    
T  31204885 aaaagagaaatgatatttctacaaccattttttgataacttttgaaataactctctctctcatattcatatgtgtttttattctctctc 31204797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 887 - 939
Target Start/End: Original strand, 33683522 - 33683577
Alignment:
Q  887 attttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttatt 939  Q
    |||||||||||||||||| |||    ||||||||||||||||||||||||||||||    
T  33683522 attttttgacaacttttgaaactaccctctctctcatactcacatgtgtttttatt 33683577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 904
Target Start/End: Original strand, 24900783 - 24900814
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||||||||||||||||||||||    
T  24900783 atatttgaacaaccattttttgacaacttttg 24900814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 910 - 941
Target Start/End: Original strand, 25109091 - 25109122
Alignment:
Q  910 ctctctctcatactcacatgtgtttttattct 941  Q
    ||||||||||||||||||||||||||||||||    
T  25109091 ctctctctcatactcacatgtgtttttattct 25109122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 929
Target Start/End: Complemental strand, 3339573 - 3339504
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttg--gaacactctctctcatactcacatg 929  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||   |||  |||||||||||||||||||    
T  3339573 aaagagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatg 3339504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 8505848 - 8505806
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  8505848 aaagagaaatgatatttgaacaatcattttttgacaacttttg 8505806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 859 - 904
Target Start/End: Complemental strand, 11635613 - 11635567
Alignment:
Q  859 taaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||    
T  11635613 taaaaatgagaaatgatatttgaacaatcattttttgacaacttttg 11635567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 928
Target Start/End: Original strand, 21506344 - 21506401
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacat 928  Q
    ||||||| ||||||||||||||||||||||| |  |||  ||||||||||||||||||    
T  21506344 atatttgtacaaccattttttgacaactttttgacaactttctctctcatactcacat 21506401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 949
Target Start/End: Complemental strand, 28982702 - 28982624
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg-gaacactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    ||||||||||| ||||||||| |||||||||| ||  |||||||||||||||| || |||  ||||||||| |||||||    
T  28982702 atatttgaacatccattttttaacaacttttgtgacaactctctctcatactctcattgtacttttattctctctcttc 28982624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 4338112 - 4338075
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataac 183  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  4338112 ttatgcagggtgcataaggattccttatgcatgataac 4338075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 873 - 950
Target Start/End: Original strand, 11323917 - 11323995
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| ||||||| ||||| ||||||||||  ||| ||||||||||||||  |||||||||||||||| ||||||||    
T  11323917 atatttgtacaaccactttttaacaacttttgatacaactctctctcatacttccatgtgtttttattctctctcttct 11323995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 873 - 941
Target Start/End: Original strand, 31143278 - 31143349
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattct 941  Q
    ||||||| |||| ||||||||||||||||||| |||| ||   ||||| |||||||||||||||||||||||    
T  31143278 atatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacatgtgtttttattct 31143349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 874 - 948
Target Start/End: Original strand, 41442181 - 41442258
Alignment:
Q  874 tatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||| ||||||||||||||| |||||||  ||||    |||||||||||||||||||| ||| |||||||||||||    
T  41442181 tatttgtacaaccattttttgataacttttacaacaaccttctctctcatactcacatgtttttatattctatctctt 41442258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 859 - 950
Target Start/End: Complemental strand, 41448254 - 41448162
Alignment:
Q  859 taaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||| |||||||| ||||||| ||||||||||||  |||||||||| ||||   ||||||||||||||||||||   ||||||||| ||||||||    
T  41448254 taaaatagagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctctctcatactcacatg---ttttattctctctcttct 41448162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 873 - 938
Target Start/End: Original strand, 41850951 - 41851019
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttat 938  Q
    ||||||| |||||||| ||||||||||||||| ||||   ||| ||||||||||||| |||||||||||    
T  41850951 atatttgtacaaccatattttgacaacttttgaaacaaccctccctctcatactcacttgtgtttttat 41851019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 34627955 - 34627914
Alignment:
Q  863 aaagagaaatatatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  34627955 aaagagaaatatatttgtacaactattttttgacaacttttg 34627914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 861 - 949
Target Start/End: Original strand, 41717446 - 41717537
Alignment:
Q  861 aaaaagagaaatatatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    |||| |||||| ||||||| | ||||||||| ||||||||||| |  ||| |||||| ||||||||||| | |||||||||||| |||||||    
T  41717446 aaaaggagaaagatatttgtataaccattttatgacaactttttgacaactctctctttcatactcacattatgtttttattctctctcttc 41717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 9639935 - 9639852
Alignment:
Q  102 ggtgtaggaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataac 183  Q
    |||||| |||| |||| |||||||||||| |||||||||||   | |||| |||||||||||||||| | ||||||||||||||    
T  9639935 ggtgtacgaagtaattatgttgagctaccggttaatgggctgggatttatgcagggtgcataaggatgccttatgcatgataac 9639852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 903
Target Start/End: Original strand, 32362932 - 32362971
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaactttt 903  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  32362932 agagaaatgatatttgaacaaccattttttgacaactttt 32362971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 928
Target Start/End: Complemental strand, 36869909 - 36869843
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacat 928  Q
    |||||||| ||||||| ||||||||||||||||||||||| |  |||  ||||||||||||||||||    
T  36869909 agagaaatgatatttgtacaaccattttttgacaacttttagacaactttctctctcatactcacat 36869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 889 - 939
Target Start/End: Complemental strand, 39284714 - 39284663
Alignment:
Q  889 tttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttatt 939  Q
    |||||||||||||||| |||| |||||||||||||||| |||| ||||||||    
T  39284714 tttttgacaacttttgaaacaactctctctcatactcatatgtatttttatt 39284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 929
Target Start/End: Original strand, 52939647 - 52939717
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttg-gaacactctctctcatactcacatg 929  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||||||    
T  52939647 aaaatagagaaatgatatttgaacaaccatttttt-acaacttttgtgacaactttctctcatactcacatg 52939717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 950
Target Start/End: Complemental strand, 9327048 - 9326968
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||| |||| || |||| ||||||||||| ||||    ||| |||||||||||||||| |||||||||| ||||||||    
T  9327048 atatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacatgtctttttattctctctcttct 9326968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 949
Target Start/End: Complemental strand, 15927658 - 15927578
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcaca-tgtgtttttattctatctcttc 949  Q
    ||||||||||| ||||||||| |||||||||| ||||   ||||||||||||||| || |||  ||||||||| |||||||    
T  15927658 atatttgaacatccattttttaacaacttttgtaacaactctctctctcatactctcattgtacttttattctctctcttc 15927578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 865 - 902
Target Start/End: Original strand, 28700471 - 28700509
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttt 902  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  28700471 agagaaatgatatttgaacaaccattttttgacaacttt 28700509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 32146060 - 32146018
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  32146060 aaagagaaatgatatttgaacaactattttttgacaacttttg 32146018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 928
Target Start/End: Original strand, 48405408 - 48405476
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| ||||    ||||||||||||||||||    
T  48405408 aagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacat 48405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 928
Target Start/End: Complemental strand, 7288 - 7220
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacat 928  Q
    |||||||||| ||||||| |||| |||||| |||||||||||||  |||  ||||||||||||||||||    
T  7288 aaagagaaatgatatttgtacaatcattttctgacaacttttggacaactttctctctcatactcacat 7220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 913 - 950
Target Start/End: Complemental strand, 32622386 - 32622349
Alignment:
Q  913 tctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  32622386 tctctcatactcacatgtgtatttattctctctcttct 32622349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 929
Target Start/End: Complemental strand, 42357143 - 42357087
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg-gaacactctctctcatactcacatg 929  Q
    ||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||||||    
T  42357143 atatttgaacaaccatttttt-acaacttttgtgacaactttctctcatactcacatg 42357087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 885 - 941
Target Start/End: Original strand, 48335231 - 48335290
Alignment:
Q  885 ccattttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattct 941  Q
    ||||||||| ||||||||||||| |    ||||||||||||||||||||| |||||||||    
T  48335231 ccattttttaacaacttttggaataaccttctctctcatactcacatgtggttttattct 48335290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 858 - 902
Target Start/End: Original strand, 49761311 - 49761356
Alignment:
Q  858 ataaaaaagagaaat-atatttgaacaaccattttttgacaacttt 902  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  49761311 ataaaaaagagaaatgatatttgaacatccattttgtgacaacttt 49761356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 865 - 928
Target Start/End: Complemental strand, 50207042 - 50206975
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacat 928  Q
    |||||||| ||||||||||| ||||||| |||||||||||| ||||    ||||||||||||||||||    
T  50207042 agagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacat 50206975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 860 - 904
Target Start/End: Complemental strand, 50559289 - 50559244
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  50559289 aaaaaagagaaatgatatttgtacaactattttttgacaacttttg 50559244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 53595587 - 53595624
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataac 183  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  53595587 ttatgcagggtgcataaggattccttatgcatgataac 53595624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 2741619 - 2741661
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacac 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  2741619 ttatgcagggtgcataaggattctttatgcatgataaccacac 2741661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 881 - 950
Target Start/End: Original strand, 28501463 - 28501535
Alignment:
Q  881 acaaccattttttgacaacttttgga---acactctctctcatactcacatgtgtttttattctatctcttct 950  Q
    ||||||||||||||||||||||||||   || |||||||||||| ||| ||||||||| ||||| ||||||||    
T  28501463 acaaccattttttgacaacttttggaaccaccctctctctcatattcagatgtgttttaattctctctcttct 28501535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 31528945 - 31528901
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  31528945 ttatgcagggtgcataaggattctttatgcatgataaccgcaccc 31528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 946
Target Start/End: Complemental strand, 35883680 - 35883594
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttggaacactc---tctctcatactcacatgtgtttttattctatctc 946  Q
    ||||||||| ||||||| ||||  |||||||||||||||||| ||||  |   ||||||||||||||||||||||||||||| ||||    
T  35883680 aagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacatgtgtttttattctctctc 35883594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 863 - 929
Target Start/End: Complemental strand, 48983742 - 48983672
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacatg 929  Q
    |||||||||| ||||||||||||||||||||||||||||||||    |||  |||||||||||||||||||    
T  48983742 aaagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacatg 48983672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 928
Target Start/End: Original strand, 4213067 - 4213138
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacat 928  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||    |||  ||||||||||||||||||    
T  4213067 aaaaagagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcatactcacat 4213138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 865 - 928
Target Start/End: Complemental strand, 9567033 - 9566966
Alignment:
Q  865 agagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacat 928  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||  ||||||||||||||||||    
T  9567033 agagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 9566966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 881 - 941
Target Start/End: Original strand, 49902651 - 49902714
Alignment:
Q  881 acaaccattttttgacaacttttggaacactct---ctctcatactcacatgtgtttttattct 941  Q
    |||||||||||||||||||||||  |||| |||   ||||||||||||||||||| ||||||||    
T  49902651 acaaccattttttgacaacttttaaaacaatcttccctctcatactcacatgtgtatttattct 49902714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 861 - 904
Target Start/End: Original strand, 9987946 - 9987990
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  9987946 aaaaagagaaatgatatttgaacaaccaatttttgacaacttttg 9987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 19216673 - 19216713
Alignment:
Q  144 acttatccagggtgcataaggattctttatgcatgataacc 184  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  19216673 acttatgcagggtgcataaggattccttatgcatgataacc 19216713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 861 - 904
Target Start/End: Original strand, 27742612 - 27742656
Alignment:
Q  861 aaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  27742612 aaaaagagaaatgatatttgaacaaccactttttgacaacttttg 27742656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 857 - 928
Target Start/End: Original strand, 31378476 - 31378548
Alignment:
Q  857 tataaaaaagagaaat-atatttgaacaaccattttttgacaacttttggaacactctctctcatactcacat 928  Q
    |||||| ||||||||| ||||||| | |||| |||| ||||||||||| ||  ||||||||||||||||||||    
T  31378476 tataaataagagaaatgatatttgtaaaaccgttttctgacaactttttgacaactctctctcatactcacat 31378548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 33097921 - 33097965
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||    
T  33097921 ttatgcagggtgcataaggattccttaagcatgataaccacaccc 33097965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 890 - 941
Target Start/End: Complemental strand, 43891813 - 43891761
Alignment:
Q  890 ttttgacaacttttggaaca-ctctctctcatactcacatgtgtttttattct 941  Q
    |||||| |||||||| |||| |||||||||||||| |||||||||||||||||    
T  43891813 ttttgagaacttttgaaacaactctctctcatacttacatgtgtttttattct 43891761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 44261196 - 44261240
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||    
T  44261196 ttatgcagggtgcataaggattccttatgcatgataaccgcaccc 44261240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 928
Target Start/End: Original strand, 48858819 - 48858889
Alignment:
Q  862 aaaagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacat 928  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    |||  ||||||||||||||||||    
T  48858819 aaaagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacat 48858889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 904
Target Start/End: Complemental strand, 19947804 - 19947773
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||||||||||||||||||||||    
T  19947804 atatttgaacaaccattttttgacaacttttg 19947773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 935
Target Start/End: Complemental strand, 51231369 - 51231304
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaaca---ctctctctcatactcacatgtgtttt 935  Q
    ||||||| ||||||| ||||| ||||||||||| |||   ||||||||||||||||||||| ||||    
T  51231369 atatttgtacaaccactttttaacaacttttggcacaactctctctctcatactcacatgtatttt 51231304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 902
Target Start/End: Complemental strand, 52576375 - 52576337
Alignment:
Q  863 aaagagaaatatatttgaacaaccattttttgacaacttt 902  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  52576375 aaagagaaatatatttgaacaaccatttttt-acaacttt 52576337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 889 - 950
Target Start/End: Complemental strand, 2279369 - 2279305
Alignment:
Q  889 tttttgacaacttttggaacac---tctctctcatactcacatgtgtttttattctatctcttct 950  Q
    |||||||||||||||| ||||    ||||||||||  ||||||||||||||||||| ||||||||    
T  2279369 tttttgacaacttttgaaacaactatctctctcatgttcacatgtgtttttattctctctcttct 2279305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 911 - 941
Target Start/End: Original strand, 3904233 - 3904263
Alignment:
Q  911 tctctctcatactcacatgtgtttttattct 941  Q
    |||||||||||||||||||||||||||||||    
T  3904233 tctctctcatactcacatgtgtttttattct 3904263  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 51800998 - 51800960
Alignment:
Q  146 ttatccagggtgcataaggattctttatgcatgataacc 184  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  51800998 ttatgcagggtgcataaggattcattatgcatgataacc 51800960  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 886 - 936
Target Start/End: Complemental strand, 17777520 - 17777466
Alignment:
Q  886 cattttttgacaacttttggaaca----ctctctctcatactcacatgtgttttt 936  Q
    ||||||||||||||||||| ||||    ||||||||||||||||||||| |||||    
T  17777520 cattttttgacaacttttgaaacaagccctctctctcatactcacatgttttttt 17777466  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 860 - 904
Target Start/End: Original strand, 26159435 - 26159480
Alignment:
Q  860 aaaaaagagaaat-atatttgaacaaccattttttgacaacttttg 904  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||    
T  26159435 aaaaaagagaaatgatatttgaacaatcattttttgacaatttttg 26159480  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 928
Target Start/End: Original strand, 27352627 - 27352695
Alignment:
Q  863 aaagagaaat-atatttgaacaaccattttttgacaacttttgg--aacactctctctcatactcacat 928  Q
    |||||||||| ||||||| ||||||||||| ||| |||||||||  |||  ||||||||||||||||||    
T  27352627 aaagagaaatgatatttgtacaaccattttgtgataacttttggacaactttctctctcatactcacat 27352695  T

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Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 887 - 947
Target Start/End: Complemental strand, 11602 - 11539
Alignment:
Q  887 attttttgacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctct 947  Q
    |||||||||||||||||| ||||   |||||||||||||||| ||||||||||||||| |||||    
T  11602 attttttgacaacttttgaaacaattctctctctcatactcaaatgtgtttttattctctctct 11539  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 873 - 949
Target Start/End: Complemental strand, 31361 - 31284
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactctctctcatactcacatg-tgtttttattctatctcttc 949  Q
    ||||||| ||||||||||| | ||||||||||||  ||| ||||||||||||||||| |||| |||| || |||||||    
T  31361 atatttggacaaccattttgtaacaacttttggacaactttctctcatactcacatgatgttcttatcctctctcttc 31284  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 35842 - 35759
Alignment:
Q  109 gaagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacaccc 190  Q
    ||||||||| ||||| |||||||||||||| ||| | | |||| || ||||||||||||| | ||||||||||||||| |||||    
T  35842 gaagcaattatgttgggctaccagttaatgagctgagatttatgcaaggtgcataaggatgccttatgcatgataaccgcaccc 35759  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 119880 - 119963
Alignment:
Q  110 aagcaatt-tgttgagctaccagttaatgggctaa-acttatccagggtgcataaggattctttatgcatgataaccacacccc 191  Q
    |||||||| ||||| ||||||||||||||||||   | |||| ||| |||||||||||| | ||||||||||||||| ||||||    
T  119880 aagcaattatgttgggctaccagttaatgggctgggatttatgcagagtgcataaggatgccttatgcatgataaccgcacccc 119963  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 873 - 938
Target Start/End: Complemental strand, 72232 - 72166
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttggaacactctctctcatactcaca-tgtgtttttat 938  Q
    ||||||| ||||||||||| | ||||||||| ||  ||| ||||||||||||||| |||||||||||    
T  72232 atatttgtacaaccattttgtaacaacttttagacaactttctctcatactcacattgtgtttttat 72166  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 864 - 928
Target Start/End: Complemental strand, 101979 - 101911
Alignment:
Q  864 aagagaaat-atatttgaacaaccattttttgacaacttttg---gaacactctctctcatactcacat 928  Q
    ||||||||| |||| |||||||||||||||||||||||||||    |||  ||||||||||||||||||    
T  101979 aagagaaatgatatctgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 101911  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 865 - 948
Target Start/End: Complemental strand, 49425 - 49337
Alignment:
Q  865 agagaaat-atatttgaacaaccatttttt-gacaacttttggaaca---ctctctctcatactcacatgtgtttttattctatctctt 948  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||| ||||   ||| ||| |||||| ||||||||||||||||| ||||||    
T  49425 agagaaatgatatttgtacaaccatttttttgacaatttttgaaacatctctccctcacatactgacatgtgtttttattctctctctt 49337  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 873 - 925
Target Start/End: Original strand, 35531 - 35583
Alignment:
Q  873 atatttgaacaaccattttttgacaacttttg-gaacactctctctcatactca 925  Q
    ||||||||||||||||||||| |||||||||| ||  |||||||||||||||||    
T  35531 atatttgaacaaccatttttt-acaacttttgtgataactctctctcatactca 35583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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