View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-5 (Length: 805)
Name: NF4504-Insertion-5
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-139; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 35 - 382
Target Start/End: Complemental strand, 6056578 - 6056230
Alignment:
| Q |
35 |
cctttttctgaacattttgaggtctctctatgtgtgaggccctgtgccaagggcctggttgcacttagcctaggccggcccnnnnnnnaaccaagtgaat |
134 |
Q |
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| T |
6056578 |
cctttttctgaatattttgaggtctctctatgtgtgatgccctgtgccaagggcctggttgcacttggcctacgccggccctttttttaactaagtgaat |
6056479 |
T |
|
| Q |
135 |
aacctcaagtgattaatgttctccacaaaataatgaatcacttggaagaaccgagttagagtcattgatggaataattttgagttaaactttacttacct |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6056478 |
gacctcaagtgattaatgttctccacaaaataatgaatcacttggaagaaccgagttagagtcattgatggaataattttgggttaaactttacttacct |
6056379 |
T |
|
| Q |
235 |
ccgaatcgaactttagattaatagagtcccttacttccgaccaaagatcagattattagaaccgttttcccataaaaactaaagggtcaatacaaaaata |
334 |
Q |
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||||||||||||| |||| || ||||||||||| || |||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
6056378 |
ccgaatcgaacttcagatgaacagagtcccttatttacgaccaaacatcagattattaggaccgtttttccataaaaactaaagggtcgatacaaaaata |
6056279 |
T |
|
| Q |
335 |
aattatttaaaatgttttgaaattgtcta-gtgaaattaattttgaagt |
382 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6056278 |
aattatttaaaatgttttgaaattgtctacgtcaaattaattttgaagt |
6056230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 445 - 805
Target Start/End: Original strand, 6070224 - 6070598
Alignment:
| Q |
445 |
gataaatattaatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaataacacccttgtttattcttcaaattacata--- |
541 |
Q |
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| T |
6070224 |
gataaatattaatatgcataacacaaatcataagcttaaacatgtatgaacctgaaaatgtcacaacaacacccttgtttattcttcaaattacatacat |
6070323 |
T |
|
| Q |
542 |
-tgctagctttattcctaatcccccttgtttattctaattnnnnnnnnnn----------ctccatttattctttaaatttcaccactagcattattctc |
630 |
Q |
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| T |
6070324 |
atgctagctttattcctaaccacccttgtttattctaattaaaaaaaaaaaaaaaaaaaactccatttattctttaaatttcaccactagcattataccg |
6070423 |
T |
|
| Q |
631 |
aaatctcagatgaataacatttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgt |
730 |
Q |
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| T |
6070424 |
aaatctcatttgaacaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctttgggtgt |
6070523 |
T |
|
| Q |
731 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcc |
805 |
Q |
| |
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| T |
6070524 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcc |
6070598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 448 - 805
Target Start/End: Complemental strand, 6056166 - 6055820
Alignment:
| Q |
448 |
aaatattaatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaataacacccttgtttattcttcaaattacatatgctag |
547 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
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| T |
6056166 |
aaataataatatgcataacacaaatcataagcttaaacatgtatgaacccgaaaatgtcacaacaactc--ttgtttattcttcaaattacatatgctag |
6056069 |
T |
|
| Q |
548 |
ctttattcctaatcccccttgtttattctaatt-----nnnnnnnnnnctccatttattctttaaatttcaccactagcattattctcaaatctcagatg |
642 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| || |
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| T |
6056068 |
ctttattcctaaccccccttgtttattctaattaaaaaaaaaaaaaaactccatttattctttaaatttcaccactagcattatacccaaatctcatttg |
6055969 |
T |
|
| Q |
643 |
aa-taacatttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagca |
741 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | || | | |
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| T |
6055968 |
aacaaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctcttg-------aacctg-- |
6055878 |
T |
|
| Q |
742 |
gtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcc |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6055877 |
------aaatagccaggtggcaccactcgaatttcaactccatgcatctcttcctttattttcc |
6055820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 473 - 580
Target Start/End: Original strand, 6067433 - 6067543
Alignment:
| Q |
473 |
cataagcttaaacatgta---tgaacccgaaaatgtcacaataacacccttgtttattcttcaaattacatatgctagctttattcctaatcccccttgt |
569 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
6067433 |
cataagcttaaacatgtagtatgaatccgaaaatgtcacaacaacacccttgtttattcttcaaattacatatgctagctttattcccaaccccccttgt |
6067532 |
T |
|
| Q |
570 |
ttattctaatt |
580 |
Q |
| |
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||||||||||| |
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| T |
6067533 |
ttattctaatt |
6067543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 596 - 803
Target Start/End: Original strand, 6085465 - 6085672
Alignment:
| Q |
596 |
tttattctttaaatttcaccactagcattattctcaaatctcagatgaataacatttagttgatgaatcaaccaattgttggagtcttaatgaccttatt |
695 |
Q |
| |
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||||||||| ||||| || ||||||| |||| | ||||||| | |||| || |||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
6085465 |
tttattcttcaaattacatcactagctttatacccaaatcttatgtgaacaatatttagttgatgaatcaaccaattattggagtcctaatgaccttatt |
6085564 |
T |
|
| Q |
696 |
agattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcc |
795 |
Q |
| |
|
||||| ||||||||||||||||||||| | | | |||||||||||||||| | |||| ||||||||| |||||||||||||| || |||||| |
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| T |
6085565 |
agattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatatatcttcc |
6085664 |
T |
|
| Q |
796 |
tttatttt |
803 |
Q |
| |
|
|||||||| |
|
|
| T |
6085665 |
tttatttt |
6085672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 3519246 - 3519191
Alignment:
| Q |
60 |
ctctatgtgtgaggccctgtgccaagggcctggttgcacttagcctaggccggccc |
115 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| |
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|
| T |
3519246 |
ctctaagtgtgaggccctgtgccaaggggttggttgcacttggccaaggccggccc |
3519191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 636
Target Start/End: Original strand, 6067566 - 6067608
Alignment:
| Q |
594 |
catttattctttaaatttcaccactagcattattctcaaatct |
636 |
Q |
| |
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|||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
6067566 |
catttattctttaaatattaccactagcattattcccaaatct |
6067608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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