View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-6 (Length: 780)
Name: NF4504-Insertion-6
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 441 - 780
Target Start/End: Complemental strand, 48403940 - 48403602
Alignment:
| Q |
441 |
tggaattgtgctctttgtgattccaatgatgaggatagcttaaacttattttttaaatgccccaatagttgtaatatatggagtatgtgcagctttcact |
540 |
Q |
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| T |
48403940 |
tggaattgtgctctttgtgattccaatgatgaggatagcttaaatttattttttaaatgccccaatagttgtaatatatggagtatgtgcagctttcact |
48403841 |
T |
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| Q |
541 |
cagctattgataacaccattactcaagagcaagctaccccacatattgttttttcatcttttgctggttatatgaagtgaagaggcatcacttttcttct |
640 |
Q |
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| T |
48403840 |
cagctattgataacaccattactcaagagcaagctgccccacatattgttttt-catcttttgctggttatatgaagtgaagaggcatcacttttcttct |
48403742 |
T |
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| Q |
641 |
tgtgtaccatggagtatctggaagcaactaaacaataggatatggaatgagacggttgatgctcaatcctttgagtggcaaacagcacggaatgacggaa |
740 |
Q |
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| T |
48403741 |
tgtgtaccatggagtatctcgacgcaactaaacaataggatatggaatgagacggttgatgctcaatcctttgagtggcaaacagcacggaatgacggaa |
48403642 |
T |
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| Q |
741 |
agtaagtcaacaaaccagctagcaagcaccgtgaacagga |
780 |
Q |
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| T |
48403641 |
agtaagtcaacaaaccagctagcaagcaccgtgaacagga |
48403602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 48408063 - 48407807
Alignment:
| Q |
7 |
aaatctatcccagttttgagtaataattgaatttttggtggacaccatatcaatccacaccatgaaagtatgttttccctagctgaattaaaagtagcag |
106 |
Q |
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| T |
48408063 |
aaatctatcccagttttgagtgataattgaatttttggtggacaccatatcattccacaccatgaaggtatgttttccctagctgaattaaaagtagcag |
48407964 |
T |
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| Q |
107 |
attgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcctccagtataaacataatgaatacgtctatg |
206 |
Q |
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| T |
48407963 |
attgtatgattcatgagtataaagcttggaatgtcccattcattagttcgatttttatcatgaaactgcctccagtgtaaacataatgaatatgtctatg |
48407864 |
T |
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| Q |
207 |
tatcattctgtgatcgaggacaatcttgtgtggacgaaagaaaataatggtgagtactcgg |
267 |
Q |
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| T |
48407863 |
tatcattctgtgaccgaggacaatct----tggacgaaagaaaataatggtgagtactcgg |
48407807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 5634114 - 5634204
Alignment:
| Q |
231 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
321 |
Q |
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| T |
5634114 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
5634204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 11568571 - 11568481
Alignment:
| Q |
231 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
321 |
Q |
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| T |
11568571 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
11568481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 19111361 - 19111271
Alignment:
| Q |
231 |
cttgtgtggacgaaagaaaataatggtgagtactcggtttgtagtgcttataagttgtgtatgcaggatttgcttgatataaatcatttta |
321 |
Q |
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| T |
19111361 |
cttgtttggacgaaggaaaataatggtgagtattctgttagaagtgcatataaaatgtgtatgcaagaattacttgatgtcaatcatttta |
19111271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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