View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4504-Insertion-7 (Length: 671)

Name: NF4504-Insertion-7
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4504-Insertion-7
NF4504-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-671)||(45133489-45134152)


Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 8 - 671
Target Start/End: Original strand, 45133489 - 45134152
Alignment:
Q  8 ctgccattgaaggtcttctttccatctgctatgtcaataggcttcactgcattggatagatcaccaagtggttttcttcctccagccctagatttcaact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45133489 ctgccattgaaggtcttctttccatctgctatgtcaataggcttcactgcattggatagatcaccaagtggttttcttcctccagccctagatttcaact 45133588  T
Q  108 ttcctgcaaaatctgtctttatagacatagttcctgcatctgcaccagcattaagaatcagcctagccattctacacacataaacaattaatggcaaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45133589 ttcctgcaaaatctgtctttatagacatagttcctgcatctgcaccagcattaagaatcagcctagccattctacacacataaacaattaatggcaaaaa 45133688  T
Q  208 catgtttaaacataacgaactagattaataccattaacatggtcaatgacattttggtcttgaaacaaacgaacagttcgtgcagccattttgtggttaa 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45133689 catgtttaaacataatgaactagattaataccattaacatggtcaatgacattttggtcttgaaacaaacgaacagttcgtgcagccattttgtggttaa 45133788  T
Q  308 agtagctaatctcaaatgaacaccctgcaaatattgtaaaagggttaagccatcttagaaatctatcacatacaatccagtgtcataatgtcatcttcat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45133789 agtagctaatctcaaatgaacaccctgcaaatattgtaaaagggttaagccatcttagaaatctatcacatacaatccagtgtcataatgtcatcttcat 45133888  T
Q  408 tcatttaaaaagaaaaatatcaatgacggttaaatcatcatttgtcaactttcaccaattacttcatcttaataaattgaataccaatgtttatggactt 507  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45133889 tcatttaaaaagaaaaatatcaatgacggctaaatcatcatttgtcatctttcaccaattacttcatcttaataaattgaataacaatgtttatggactt 45133988  T
Q  508 acaatgcaggaaggataaatttctcctgattcttgggaaagaataataaacatgcttaatttttcatttaaacttcctgaccttcaaaagaaacccaaaa 607  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45133989 acaatgcaggaaggagaaatttctcctgattcttgggaaagaataataaacatgcttaatttttcatttaaacttcctgaccttcaaaagaaacccaaaa 45134088  T
Q  608 tctcaattttgaaaccccaaaagaaaacttacggtttcaatttttcctcatctaacttgaatgt 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45134089 tctcaattttgaaaccccaaaagaaaacttacggtttcaatttttcctcatctaacttgaatgt 45134152  T

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