View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-8 (Length: 622)
Name: NF4504-Insertion-8
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 622
Target Start/End: Complemental strand, 42003032 - 42002418
Alignment:
| Q |
8 |
ataaacaacttcagtaatctggctctgacagtgacgaactgcaaagctcatattgtttctgcacatttggcttgttccttctggaagaattaagtcaatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42003032 |
ataaacaacttcagtaatctggctctgacagtgacgaactgcaaagctcacattgtttctgcacatttggcttgttccttctggaagaattaagtcaatg |
42002933 |
T |
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| Q |
108 |
caatcataggactttcaatcaaatttatggtgcaaaattccttttcttcccttagtcactgcagctatatctactgttttgagtgttttcgatttccacg |
207 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
42002932 |
caatcataggacttgctttcaaatttatggtgcaaaattccttttcttcccttagtcactgcagctatatctacttgtttgagtgttttcaatttccacg |
42002833 |
T |
|
| Q |
208 |
aatgcattttcactgccaaataattatattcattattcttgggttcaaatgtgagtggttcgactctctcctacattatatgcaacttatatacttaatg |
307 |
Q |
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| T |
42002832 |
aatgcattttcactgccaaataattatattcattattcttgggttcaaatgtgagtggtttgactctctcctacattatatgcaacttatatacttaatg |
42002733 |
T |
|
| Q |
308 |
atgtggtgtcggacctcactcttgatggttctgtagcattaacacattgttgttcttgacgctcctctgaactatctaacaatttaaacgaaattgaatg |
407 |
Q |
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|||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
42002732 |
atgtggtgtcggacatcactctttatggttatgtggcattaacacattgttgttcttgacgctctcccgaactatctaacaatttaaacgaaattgaatg |
42002633 |
T |
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| Q |
408 |
atatatacctgattttgaatcagatttatcaaagtatatggttgtttgttattcatttgaatgtagtaaataaataatgtcgtaaaattaggcggtttaa |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42002632 |
atatatacctgattttgaatcagatttatcaaagtatatggctgtttgttattcatttgaatgtagtaaataaataatgttgtaaaattaggcggtttaa |
42002533 |
T |
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| Q |
508 |
acaaagtaattgatctcaagtgattaataagttttactaaatgacgaattgttcaacctgagttggattcaaggctggaacaattttagatcaaacttta |
607 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
42002532 |
acaaagtaattgatctcaagtgattaataagttttattaaaggacaaattgttcaacctgagttggattcatggctggaacaattttagatcgaacttta |
42002433 |
T |
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| Q |
608 |
cttacctctcgatcg |
622 |
Q |
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| T |
42002432 |
cttacctctcgatcg |
42002418 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 543
Target Start/End: Complemental strand, 125312 - 125280
Alignment:
| Q |
511 |
aagtaattgatctcaagtgattaataagtttta |
543 |
Q |
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| T |
125312 |
aagtaattgaactcaagtgattaataagtttta |
125280 |
T |
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