View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504-Insertion-9 (Length: 619)
Name: NF4504-Insertion-9
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 22120232 - 22120554
Alignment:
| Q |
7 |
aagtacaaatggtcaacattaagtggttggtaataatgtcatattttctatttacacatggtttcttttttaaggttttaaatacttgtttggtagacac |
106 |
Q |
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| T |
22120232 |
aagtacaaatggtcaacattaagtggttggtaataatgtcatattttctatttccacgtggtttctttttcaaggttttaa-tacttgtttggtagacac |
22120330 |
T |
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| Q |
107 |
aatataataagaaattaatgattaataggataaaagtgtttatcccataagtacaaatgagaagggtaaaagtttgtggagaatatttggtgtgttaggg |
206 |
Q |
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| T |
22120331 |
aatataataagaaattaatgattaataggataaaagtgtttatcccataagtacaaatgagaagggtaaaagtttgtggagaatatttggggtgttaggg |
22120430 |
T |
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| Q |
207 |
tgtgggtttgaacatgaaatatttctcatatttgtcgttagcgagtttcactcttacattatttaaaatcatataaaatcagataa-agtgttagataag |
305 |
Q |
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| T |
22120431 |
tgtgggtttgaacatgcaatatttctcatatttgtcgttagcgagtttctctcttacactctttaaaatcatataaaatcagataagagtgttagataag |
22120530 |
T |
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| Q |
306 |
aactcatccaaaacaatgaattaa |
329 |
Q |
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| T |
22120531 |
aactcatccaaaacaatgaattaa |
22120554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 369 - 619
Target Start/End: Original strand, 22120564 - 22120815
Alignment:
| Q |
369 |
gaccctgcgtatgcagtagctttagtgcatcggtagttgtgctaacgttaagggtggtgactctttaacgtttaatttt-tgtaggaaacgagccgcttg |
467 |
Q |
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| T |
22120564 |
gaccctgcgtatgcagtagctttagtgcatcggtagttgtgctaatgttaagggtggtgactctttaacgtttaattttttgtaggaaacgagccgcttg |
22120663 |
T |
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| Q |
468 |
taatagcacgtggaggattcacaggtctattcccagaaggcagtccagaagcaattggactattcccagaaggcagtgcagaaacaattggaatatcaat |
567 |
Q |
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| T |
22120664 |
taatagcacgtggaggattcacaggtctattcccagaaggcagtccagaagcaattggactattcccagaaggcagtgcagaaacaattggaatatcaat |
22120763 |
T |
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| Q |
568 |
gaacaatagcatttttctttgcaatattcagtttacaaaaggtgctggtgga |
619 |
Q |
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| T |
22120764 |
gaacaatagcatttttctttgcaatattcagtttacaaaagatgctggtgga |
22120815 |
T |
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