View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4504_low_1 (Length: 322)

Name: NF4504_low_1
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4504_low_1
NF4504_low_1
[»] chr4 (5 HSPs)
chr4 (219-311)||(1868907-1869002)
chr4 (19-113)||(1858963-1859060)
chr4 (259-311)||(8614181-8614233)
chr4 (267-311)||(32294774-32294818)
chr4 (266-311)||(46686243-46686290)
[»] chr2 (7 HSPs)
chr2 (261-311)||(43205100-43205150)
chr2 (267-311)||(35008115-35008159)
chr2 (264-311)||(1096357-1096404)
chr2 (267-311)||(24361504-24361548)
chr2 (256-287)||(42251972-42252003)
chr2 (266-294)||(9377768-9377796)
chr2 (265-293)||(37064080-37064108)
[»] chr1 (5 HSPs)
chr1 (268-311)||(48689570-48689613)
chr1 (268-311)||(29094760-29094803)
chr1 (266-311)||(48325792-48325840)
chr1 (267-311)||(12972718-12972762)
chr1 (268-304)||(51666794-51666830)
[»] chr3 (6 HSPs)
chr3 (266-311)||(21481776-21481821)
chr3 (268-302)||(44826967-44827001)
chr3 (266-311)||(31300814-31300859)
chr3 (260-288)||(349464-349492)
chr3 (259-291)||(27276750-27276782)
chr3 (279-311)||(42888786-42888818)
[»] chr6 (1 HSPs)
chr6 (268-311)||(22422164-22422207)
[»] scaffold0276 (1 HSPs)
scaffold0276 (266-311)||(1656-1702)
[»] chr5 (1 HSPs)
chr5 (266-311)||(17574238-17574283)
[»] chr8 (1 HSPs)
chr8 (267-311)||(35967420-35967464)
[»] chr7 (2 HSPs)
chr7 (256-288)||(4971278-4971310)
chr7 (268-311)||(33465053-33465099)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 1869002 - 1868907
Alignment:
Q  219 aactaacggggtgtttggtttgcatgtaattaaatcctatttataataagagaaatgatatttgtacaac---ttttgtacaattttctatctcat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||    
T  1869002 aactaacggggtgtttggtttgcatgtaattaaatcctatttataataagagaaatgatatttgtacaaccatttttgtacaactttctatctcat 1868907  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 1859060 - 1858963
Alignment:
Q  19 agtattcgaaggtttataaatattcgaagttcaaatagctaa---cacatcaggaacatgcaagagaagttttaaaaaagaacaattatgtatgggaa 113  Q
    |||| |||||||||||||||||||  ||||||||||| ||||   ||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1859060 agtaatcgaaggtttataaatatttaaagttcaaataactaattacacataaggaacatgcaagagaagttttaaaaaaggacaattatgtttgggaa 1858963  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 8614181 - 8614233
Alignment:
Q  259 ttataataagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||| ||| |||||||||||||||||||||||||||||||  |||| ||||||    
T  8614181 ttattatatgagaaatgatatttgtacaacttttgtacaaccttctctctcat 8614233  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 32294818 - 32294774
Alignment:
Q  267 agagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||| |||||||||||||  |||| ||||||    
T  32294818 agagaaatgatatttgtataacttttgtacaaccttctctctcat 32294774  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 46686243 - 46686290
Alignment:
Q  266 aagagaaatgatatttgtacaac--ttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||    
T  46686243 aagagaaatgatatttgtacaaccattttgtacaactttctctctcat 46686290  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 43205100 - 43205150
Alignment:
Q  261 ataataagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  43205100 ataataagagaaatgatatttgtacaacttttgtacaacattctctctcat 43205150  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 35008159 - 35008115
Alignment:
Q  267 agagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  35008159 agagaaatgatatttgtacaacttttgtacaattttatttctcat 35008115  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 1096404 - 1096357
Alignment:
Q  264 ataagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||    
T  1096404 ataagagaaatgatatttgtacaacttttgtataattttatctctcat 1096357  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 24361504 - 24361548
Alignment:
Q  267 agagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||    
T  24361504 agagaaatgatatttgtacaactttttgacaactttctatctcat 24361548  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 287
Target Start/End: Complemental strand, 42252003 - 42251972
Alignment:
Q  256 tatttataataagagaaatgatatttgtacaa 287  Q
    ||||||||||||||||||||||||||||||||    
T  42252003 tatttataataagagaaatgatatttgtacaa 42251972  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 9377796 - 9377768
Alignment:
Q  266 aagagaaatgatatttgtacaacttttgt 294  Q
    |||||||||||||||||||||||||||||    
T  9377796 aagagaaatgatatttgtacaacttttgt 9377768  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 293
Target Start/End: Original strand, 37064080 - 37064108
Alignment:
Q  265 taagagaaatgatatttgtacaacttttg 293  Q
    |||||||||||||||||||||||||||||    
T  37064080 taagagaaatgatatttgtacaacttttg 37064108  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 48689570 - 48689613
Alignment:
Q  268 gagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  48689570 gagaaatgatatttgtacaacttttgtataattttctctctcat 48689613  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 29094803 - 29094760
Alignment:
Q  268 gagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||    
T  29094803 gagaaatgatatttgtacaactttcgtacaatcttctctctcat 29094760  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 48325840 - 48325792
Alignment:
Q  266 aagagaaatgatatttgtacaac--ttttgt-acaattttctatctcat 311  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||    
T  48325840 aagagaaatgatatttgtacaaccattttgtgacaattttctatctcat 48325792  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 12972762 - 12972718
Alignment:
Q  267 agagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||| |||||  |||| ||||||    
T  12972762 agagaaatgatatttgtacaacttttatacaacattctctctcat 12972718  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 51666794 - 51666830
Alignment:
Q  268 gagaaatgatatttgtacaacttttgtacaattttct 304  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  51666794 gagaaatgatatttgtacaacttttgtataatcttct 51666830  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 21481776 - 21481821
Alignment:
Q  266 aagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  21481776 aagagaaatgatatttgtacaacttttgtacaactttttctctcat 21481821  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 44826967 - 44827001
Alignment:
Q  268 gagaaatgatatttgtacaacttttgtacaatttt 302  Q
    ||||||| |||||||||||||||||||||||||||    
T  44826967 gagaaattatatttgtacaacttttgtacaatttt 44827001  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 31300814 - 31300859
Alignment:
Q  266 aagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||||  |||| ||||| ||||||    
T  31300814 aagagaaatgatatttgtacaacttttagacaactttctctctcat 31300859  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 349492 - 349464
Alignment:
Q  260 tataataagagaaatgatatttgtacaac 288  Q
    |||||||||||||||||||||||||||||    
T  349492 tataataagagaaatgatatttgtacaac 349464  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 27276750 - 27276782
Alignment:
Q  259 ttataataagagaaatgatatttgtacaacttt 291  Q
    ||||||| |||||||||||||||||||||||||    
T  27276750 ttataattagagaaatgatatttgtacaacttt 27276782  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 42888818 - 42888786
Alignment:
Q  279 tttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||||||| ||||||    
T  42888818 tttgtacaacttttgtacaattttctctctcat 42888786  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 22422164 - 22422207
Alignment:
Q  268 gagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||    
T  22422164 gagaaatgttatttgtacaacttttgtacaactttctctctcat 22422207  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 1656 - 1702
Alignment:
Q  266 aagagaaatgatatttgtacaacttttgt-acaattttctatctcat 311  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  1656 aagagaaatgatatttgaacaacttttgtgacaattttctctctcat 1702  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 17574283 - 17574238
Alignment:
Q  266 aagagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    ||||||||| |||| |||||||||||||||||| ||||| ||||||    
T  17574283 aagagaaataatatctgtacaacttttgtacaactttctctctcat 17574238  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 35967464 - 35967420
Alignment:
Q  267 agagaaatgatatttgtacaacttttgtacaattttctatctcat 311  Q
    ||||||||||||||||||||||||||  |||| ||||| ||||||    
T  35967464 agagaaatgatatttgtacaactttttgacaactttctctctcat 35967420  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 4971278 - 4971310
Alignment:
Q  256 tatttataataagagaaatgatatttgtacaac 288  Q
    |||||| ||||||||||||||||||||||||||    
T  4971278 tatttaaaataagagaaatgatatttgtacaac 4971310  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 33465099 - 33465053
Alignment:
Q  268 gagaaatgatatttgtacaac---ttttgtacaattttctatctcat 311  Q
    |||||||||||||||||||||   |||||||||||||||| ||||||    
T  33465099 gagaaatgatatttgtacaaccatttttgtacaattttctctctcat 33465053  T

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