View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4504_low_3 (Length: 218)
Name: NF4504_low_3
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 17734464 - 17734663
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17734464 |
acatcaccaaacacttgttatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactgccgg |
17734563 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17734564 |
ctccgagggtcccacacaaaaccaacttctctccttcctccagtctgaatccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
17734663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 17743704 - 17743903
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17743704 |
acatcaccaaacacttgttatccaatcaaaaactcaatgaaaagaacattgtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccgg |
17743803 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
17743804 |
ctccgagggtcccacacaaaaccaacttctctccttcctccagtctgaatccaccggtgatctcaaatcgttatgctctcaggttgtttcttctgtgctc |
17743903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 16720480 - 16720679
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||| |
|
|
| T |
16720480 |
acatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgttgtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccgg |
16720579 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
||||||||||||| | ||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16720580 |
ctccgagggtcccactcaaaaacaacttctctcctttctccagtctgaatccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
16720679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 17697494 - 17697693
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||| |
|
|
| T |
17697494 |
acatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgttgtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccgg |
17697593 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
||||||||||||| | ||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17697594 |
ctccgagggtcccactcaaaaacaacttctctcctttctccagtctgaatccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
17697693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 17716413 - 17716612
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
17716413 |
acatcaccaaacacttgttatccaatcaaaaactcaaagaaaagaatgttgtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccgg |
17716512 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
||||||||||||| | ||||| |||||||||| |||||||||||| |||||| |||| ||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
17716513 |
ctccgagggtcccactcaaaaacaacttctctccttcctccagtcagaatcccccggtaatctcaaatccttatactctcggctggtttcttctgtgctc |
17716612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 16729353 - 16729552
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| | |
|
|
| T |
16729353 |
acatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgttgtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccag |
16729452 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
16729453 |
ctccaagggtcccactcaaaaacaacttctctccttcctccagtctgaatctcccggtgatctcaaatccttatactctcggctggtttcttctgtgctc |
16729552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 17706425 - 17706624
Alignment:
| Q |
9 |
acatcatcaaactcgtattatccaatcaaaaactcaatgaaaagaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccgg |
108 |
Q |
| |
|
|||||| ||||| | | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| | |
|
|
| T |
17706425 |
acatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgttgtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccag |
17706524 |
T |
|
| Q |
109 |
ctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
208 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
17706525 |
ctccaagggtcccactcaaaaacaacttctctccttcctccagtctgaatctcccggtgatctcaaatccttatactctcggctggtttcttctgtgctc |
17706624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University