View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4504_low_4 (Length: 213)
Name: NF4504_low_4
Description: NF4504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4504_low_4 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 88394 - 88571
Alignment:
| Q |
17 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88394 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
88493 |
T |
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| Q |
117 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgaggataatagcggta |
194 |
Q |
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| T |
88494 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgagaataatagcggta |
88571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 96402 - 96573
Alignment:
| Q |
17 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| | |
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| T |
96402 |
catcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacg |
96501 |
T |
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| Q |
117 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgaggataata |
188 |
Q |
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| T |
96502 |
tgtattacatactccctctggacttaatttgcacgagaacttgttttattgatgaatgattggagaataata |
96573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 40877889 - 40877712
Alignment:
| Q |
17 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877889 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
40877790 |
T |
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| Q |
117 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgaggataatagcggta |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40877789 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgagaataatagcggta |
40877712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 40869880 - 40869709
Alignment:
| Q |
17 |
catcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| | |
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| T |
40869880 |
catcaaggataagttggtttatcggaactgttgcttctgtgcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacg |
40869781 |
T |
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| Q |
117 |
tttattatatactccctctagaactaatttacatgagagcttgttttattgatgaatgttttgaggataata |
188 |
Q |
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| T |
40869780 |
tgtattacatactccctctggacttaatttgcacgagaacttgttttattgatgaatgattggagaataata |
40869709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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