View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4505-Insertion-1 (Length: 1047)

Name: NF4505-Insertion-1
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4505-Insertion-1
NF4505-Insertion-1
[»] chr7 (7 HSPs)
chr7 (761-1047)||(29903383-29903670)
chr7 (33-187)||(29895730-29895884)
chr7 (313-396)||(29895934-29896017)
chr7 (909-1026)||(29896051-29896170)
chr7 (654-895)||(31225689-31225928)
chr7 (417-548)||(31225472-31225603)
chr7 (111-148)||(29459713-29459750)
[»] chr8 (1 HSPs)
chr8 (477-740)||(41310072-41310327)
[»] chr1 (2 HSPs)
chr1 (111-192)||(10219353-10219434)
chr1 (65-206)||(17563803-17563942)
[»] chr4 (2 HSPs)
chr4 (803-895)||(37036063-37036158)
chr4 (111-192)||(3558092-3558172)
[»] chr6 (1 HSPs)
chr6 (803-832)||(8607394-8607423)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 4e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 761 - 1047
Target Start/End: Original strand, 29903383 - 29903670
Alignment:
Q  761 atccttgcggagttgttatttggtttttatgtttttcaggtgtggtgtaccgtatatatgcggcacctttttgtatctttctatcgtccattccttgcgc 860  Q
    ||||||| |||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29903383 atccttgtggagctgttatttggtttttatgtttttcgggtggggtgtaccctatatatgcggcacctttttgtatctttctatcgtccattccttgcgc 29903482  T
Q  861 cttgcaaggttggcgctaataaattttgccgattcnnnnnnnnnnnnnctagcaaccaacaatttgtttactaccttccctcttttcctgtaataaactt 960  Q
    |||||  ||||||||||||||||||||||||||||             ||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  29903483 cttgcggggttggcgctaataaattttgccgattc--aaaaaaaaaaactagcaaccaacaatttttttactaccttccctattttcctgtaataaactt 29903580  T
Q  961 gcatgcgctatcatacgatgcgggtttatgctgttg-ctaacaataccatcctcccacaaccttgtcct-aaggttg-agtcaggaaact 1047  Q
    ||||||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  29903581 gcatgcgttatcatatgatgcgggtttatgctggtgcctaacaataccatcctcccacaaccttgtcctaaaggttgaagtcaggaaact 29903670  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 29895730 - 29895884
Alignment:
Q  33 tggtataaattggtacccgcccaattgttacgttgaaagcttagtttcacctgtttaaaagtaagtcctcttccacattttacttgtttgaatctatgtt 132  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||| ||||||||||| ||||||    
T  29895730 tggtataagttggtaccctcccaattgttacgttgaaagcttggtttcacctatttgaaagtaagtcctctcccacatttttcttgtttgaatttatgtt 29895829  T
Q  133 aatttgtatatgttgtcttcctaataataaaattgtgtgaatattctattttatg 187  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29895830 aatttgtatatgttgtcttcataataataaaattgtgtgaatattctattttatg 29895884  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 313 - 396
Target Start/End: Original strand, 29895934 - 29896017
Alignment:
Q  313 tcttaaggaatttcactctctcttgttcacatgttttcaagaaataatattttaacctcccttaggatgggtttagtcttattt 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  29895934 tcttaaggaatttcaatctctcttgttcacatgttttcaagaaagaatatttttatctcccttaggatgggtttagtcttattt 29896017  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 909 - 1026
Target Start/End: Original strand, 29896051 - 29896170
Alignment:
Q  909 ctagcaaccaacaatttgtttactaccttccctcttttcctgtaataaacttgcatg-cgctatcatacgatgcgggtttatgctgttg-ctaacaatac 1006  Q
    ||||||||||| ||||||||| | |||||||||||||||| || ||||||||||||| |   |||||| ||||||||||||||||| || ||||||||||    
T  29896051 ctagcaaccaagaatttgtttgcaaccttccctcttttcccgtgataaacttgcatgacttcatcatatgatgcgggtttatgctggtgcctaacaatac 29896150  T
Q  1007 catcctcccacaaccttgtc 1026  Q
    ||||||| ||||||||||||    
T  29896151 catcctctcacaaccttgtc 29896170  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 654 - 895
Target Start/End: Original strand, 31225689 - 31225928
Alignment:
Q  654 ttggggctgagggtctgtttgtaactagttcgagctatggctgtctaattcagtggcttttgtaccggattacagaatcataacttgacactgtcacagc 753  Q
    ||||||||| |||| || ||||  |||||| ||||||||||||| |||||  |||||  ||||| ||||||||||  |||||||| |  |||||||||||    
T  31225689 ttggggctgcgggtatgcttgtgcctagtttgagctatggctgtgtaattgggtggcgattgtatcggattacaggctcataactcgctactgtcacagc 31225788  T
Q  754 ttttcgtatccttgcggagttgttatttggtttttatgtttttcaggtgtggtgtaccgtatatatgcggcacctttttgtatctttctatcgtccattc 853  Q
     ||| | ||||||| ||||||| || ||||||||  ||  |||  | |  |||||||||| |||||  |||||| |||| |||  || | |||||||| |    
T  31225789 ctttagaatccttgtggagttgctagttggttttgttg-gtttgggcttcggtgtaccgtctatatatggcacc-ttttatattgttatgtcgtccatac 31225886  T
Q  854 cttgcgccttgcaaggttggcgctaataaattttgccgattc 895  Q
    |||||| |||||  |||||||| |||||||||||||||||||    
T  31225887 cttgcgtcttgcggggttggcgttaataaattttgccgattc 31225928  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 417 - 548
Target Start/End: Original strand, 31225472 - 31225603
Alignment:
Q  417 tgtgttgagtgctgcggtgttcttttgtttttatggtgtcggccttcttgcagttgttggtgttctctgctgagtttctttggggcttttttgcggtttc 516  Q
    ||||||| ||| |||||||||||   |||||| |||||||||  ||||  | ||||||||||||| ||||||||||| || |||||| ||||| || |||    
T  31225472 tgtgttgggtgatgcggtgttctgcagtttttttggtgtcgggtttctgtcggttgttggtgttcgctgctgagttt-ttgggggctattttgtgggttc 31225570  T
Q  517 aaacagcacctgctg-gttttcctgtgctgctg 548  Q
    ||||| ||| |||||  ||||||||||| ||||    
T  31225571 aaacaacacttgctgttttttcctgtgcagctg 31225603  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 29459750 - 29459713
Alignment:
Q  111 tttacttgtttgaatctatgttaatttgtatatgttgt 148  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  29459750 tttacttgtttgaatttatgttcatttgtatatgttgt 29459713  T

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Target: chr8 (Bit Score: 88; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 477 - 740
Target Start/End: Complemental strand, 41310327 - 41310072
Alignment:
Q  477 tgttctctgctgagtttctttggggcttttttgcggtttcaaacagcacctgctggttttcctgtgctgctgtagccgtgcagttgatgaggtgcaggag 576  Q
    ||||||||||||||||| || ||||||  ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| || |||| ||||  ||    
T  41310327 tgttctctgctgagttt-ttgggggctcctttgcgggttcaaacagcacctgctgtttttcatgtgctgctgtagccgtgcagctgctgagttgcaatag 41310229  T
Q  577 cagggcctattttgttggt-ttttctggtttggatagaccttgtttagggtgtccagggagcttttcgggtgctttgtttggggctgagggtctgtttgt 675  Q
    ||||||||    ||||||  ||||||| ||||| ||| ||||||||         |||| || ||| |||| ||||||||||||||||||||||||||||    
T  41310228 cagggcctgccgtgttggaattttctgttttgggtaggccttgtttt--------agggtgccttttgggttctttgtttggggctgagggtctgtttgt 41310137  T
Q  676 aactagttcgagctatggctgtctaattcagtggcttttgtaccggattacagaatcataacttg 740  Q
      |||||| ||||||||||||| |||||| |||||  ||||||||||||||||  ||||||||||    
T  41310136 gcctagtttgagctatggctgtgtaattcggtggccattgtaccggattacaggctcataacttg 41310072  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 10219353 - 10219434
Alignment:
Q  111 tttacttgtttgaatctatgttaatttgtatatgttgtcttcctaataataaaattgtgtgaatattctattttatgattgc 192  Q
    ||||||||||||||| || ||| ||||||||||||||| ||| |||||||| | | || ||||||| || ||||||||||||    
T  10219353 tttacttgtttgaatttaggttcatttgtatatgttgttttcataataatagattggtttgaatatgcttttttatgattgc 10219434  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 17563942 - 17563803
Alignment:
Q  65 ttgaaagcttagtttcacctgtttaaaagtaagt-cctcttccacattttacttgtttgaatctatgttaatttgtatatgttgtcttcctaataataaa 163  Q
    |||||||||||||| |   | ||| ||||||||| ||||||||||  ||||||||||| |||||||||| |||||||| | || ||  |||||||||  |    
T  17563942 ttgaaagcttagttcctattttttgaaagtaagttcctcttccacggtttacttgttttaatctatgtttatttgtattttttttc--cctaataat-ca 17563846  T
Q  164 attgtgtgaatattctattttatgattgcctacattgattgta 206  Q
     ||||||||||||| | |||| |||||||   |||||||||||    
T  17563845 cttgtgtgaatattattttttctgattgctagcattgattgta 17563803  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 803 - 895
Target Start/End: Original strand, 37036063 - 37036158
Alignment:
Q  803 tggtgtaccgtatatatgcggcacc-tttttgtatctttctat---cgtccattccttgcgccttgcaaggttggcgctaataaattttgccgattc 895  Q
    |||||| |||||||||||||||||| ||||||||  ||||| |   ||||| ||||||||| |||||  ||||||||||||||||||||| ||||||    
T  37036063 tggtgttccgtatatatgcggcaccatttttgtag-tttctgttttcgtcctttccttgcggcttgcggggttggcgctaataaattttgacgattc 37036158  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 3558092 - 3558172
Alignment:
Q  111 tttacttgtttgaatctatgttaatttgtatatgttgtcttcctaataataaaattgtgtgaatattctattttatgattgc 192  Q
    ||||||||||||||| ||||| |||||||||||||  | ||| || |||| | |||||||||||||||  ||||||||||||    
T  3558092 tttacttgtttgaatttatgtaaatttgtatatgtatttttcatattaat-agattgtgtgaatattcatttttatgattgc 3558172  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 803 - 832
Target Start/End: Complemental strand, 8607423 - 8607394
Alignment:
Q  803 tggtgtaccgtatatatgcggcaccttttt 832  Q
    ||||||||||||||||||||||||||||||    
T  8607423 tggtgtaccgtatatatgcggcaccttttt 8607394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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