View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505-Insertion-2 (Length: 667)
Name: NF4505-Insertion-2
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 125 - 667
Target Start/End: Complemental strand, 5124171 - 5123629
Alignment:
| Q |
125 |
acctccctaaacctcatcaactgtcccatttcccctttccacttccctcaagaactcatcacctctctcaaaaccttcactttcatcaacagcttcaaca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5124171 |
acctccctaaacctcatcaactgtcccatttcccctttccacttccctcaagaactcatcacctctctcaaaaccttcactttcatcaacagcttcaaca |
5124072 |
T |
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| Q |
225 |
aaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagcttctggtccttatgtcattcttggtca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5124071 |
aaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagcttctggtccttatgtcattcttggtca |
5123972 |
T |
|
| Q |
325 |
catgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattctaatctgacccatgttgatttttcaggt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5123971 |
catgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattctaatctgacccatgttgatttttcaggt |
5123872 |
T |
|
| Q |
425 |
aatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttctaataagcttgttggtgaaataccctctt |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5123871 |
aatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttctaataagcttgttggtgaaataccctctt |
5123772 |
T |
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| Q |
525 |
ccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattcattttcatctgttcctgatttggttcg |
624 |
Q |
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| T |
5123771 |
ccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattcattttcatctgttcctgatttggttca |
5123672 |
T |
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| Q |
625 |
tttggatctgagttcaaaccagcttaatggaactattccaaag |
667 |
Q |
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| T |
5123671 |
tttggatctgagttcaaaccagcttaatggaactattccaaag |
5123629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 5124288 - 5124250
Alignment:
| Q |
8 |
aatgctacactctgtgattcctccaaacccttccgccac |
46 |
Q |
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| T |
5124288 |
aatgctaccctctgtgattcctccaaacccttccgccac |
5124250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 198 - 667
Target Start/End: Complemental strand, 35921972 - 35921503
Alignment:
| Q |
198 |
ccttcactttcatcaacagcttcaacaaaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagc |
297 |
Q |
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||||||| | ||||||||| || |||| ||||| ||||| ||||| ||||| || || ||||||||||| ||| |||||||| | | ||||||| |
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| T |
35921972 |
ccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaataccccaatcaaagc |
35921873 |
T |
|
| Q |
298 |
ttctggtccttatgtcattcttggtcacatgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattct |
397 |
Q |
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|||||| |||||||| || |||| ||||||||| | ||||| | || |||||||| ||| | ||||||||||| ||| |||| | || ||||| |
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| T |
35921872 |
ttctggaccttatgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaatacatccattcc |
35921773 |
T |
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| Q |
398 |
aatctgacccatgttgatttttcaggtaatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttcta |
497 |
Q |
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|| |||||||| | ||||||||| || | ||||||||||| ||||||||||| ||||| |||||||| | | |||||||||||||||||||| | |
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| T |
35921772 |
aacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaatctttcttcaa |
35921673 |
T |
|
| Q |
498 |
ataagcttgttggtgaaataccctcttccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattc |
597 |
Q |
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|| ||| ||||| ||||||||||| | || ||||| ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
35921672 |
atgggctgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtctatcccagattc |
35921573 |
T |
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| Q |
598 |
attttcatctgttcctgatttggttcgtttggatctgagttcaaaccagcttaatggaactattccaaag |
667 |
Q |
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| |||| | |||| | |||||||| |||||||||||||||||||||| |||||||| ||||||||| |
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| T |
35921572 |
aatttctgcaattccaggtttggttcacatggatctgagttcaaaccagctcaatggaacaattccaaag |
35921503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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