View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4505-Insertion-3 (Length: 607)

Name: NF4505-Insertion-3
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4505-Insertion-3
NF4505-Insertion-3
[»] chr4 (18 HSPs)
chr4 (9-595)||(20862930-20863516)
chr4 (9-272)||(3399893-3400156)
chr4 (194-403)||(20862924-20863133)
chr4 (179-283)||(3398983-3399087)
chr4 (179-283)||(3399214-3399318)
chr4 (179-283)||(3399445-3399549)
chr4 (181-283)||(3399658-3399760)
chr4 (179-258)||(3398777-3398856)
chr4 (326-448)||(3398785-3398907)
chr4 (326-448)||(3399016-3399138)
chr4 (326-448)||(3399247-3399369)
chr4 (326-448)||(3399478-3399600)
chr4 (333-448)||(3399691-3399806)
chr4 (409-470)||(3399893-3399954)
chr4 (524-574)||(3398857-3398907)
chr4 (524-574)||(3399088-3399138)
chr4 (524-574)||(3399319-3399369)
chr4 (524-574)||(3399550-3399600)
[»] chr1 (2 HSPs)
chr1 (9-283)||(7133722-7134005)
chr1 (392-488)||(7133916-7134012)


Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Complemental strand, 20863516 - 20862930
Alignment:
Q  9 aacggagagtaacctaacctgagccttattggcgagctgaacaacgagacgatcaacgggaagcagagatttataagtgaaattatagttaatgcattca 108  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  20863516 aacggagagtaacctaacctgagccttattggtgagctgaacaacgagacgatcaacgggaagcacagatttataagtgtaattatagttaatgcattca 20863417  T
Q  109 tatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgatcccgatgtgattatcaatcttgtagatcttcgtctgatgagaatataattcgg 208  Q
    |||||||||| || ||||||||||  |  ||||||||||||||||| ||||||||||||||||| |||  |||||||| |||||||||||||||||||||    
T  20863416 tatctcatgtaccacgaaagaacacagccatgaccagcgatggcgaccccgatgtgattatcaacctttaagatcttcatctgatgagaatataattcgg 20863317  T
Q  209 aattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaaaagcttcgaattccgccttaagtgc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  20863316 aattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttattgctgctgaaccttgcttaaaagcttcgtatttcgccttaagtgc 20863217  T
Q  309 ttcaatggggtatttcaccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtat 408  Q
    ||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20863216 ttcgatggggtatttcaccggtgaccatgtatttaagttggtatggcatagatttctaaacatctccgcgttctcctcctcaagagaagataattggtat 20863117  T
Q  409 ttggctttgttaacacgcgcgggaaccacgcgagttttgggtgggagactcattgctgctgaaagttgcttagctgcttcgattttcgccttaattgctt 508  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||  |||||||||||| |||||||| |||||    
T  20863116 ttggctttgttaacacgcgcgggaaccacgcgagttttggatcggagactcattgctgctgaacgttgcttgactgcttcgatttccgccttaagtgctt 20863017  T
Q  509 caatggggtatttcaccggtgaccatgtttctaagttggtatggcatagatttctaaacatctccgcgttctcctcctcaagagaag 595  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20863016 caatggggtatttcaccggtgaccatgtttttaagttggtatggcatagatttctaaacatctccgcgttctcctcctcaagagaag 20862930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 3400156 - 3399893
Alignment:
Q  9 aacggagagtaacctaacctgagccttattggcgagctgaacaacgagacgatcaacgggaagcagagatttataagtgaaattatagttaatgcattca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  3400156 aacggagagtaacctaacctgagccttattggcgagctgaacaacgagacgaccaacgggaagcggagattcataagtgtaattatagttaacgcattca 3400057  T
Q  109 tatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgatcccgatgtgattatcaatcttgtagatcttcgtctgatgagaatataattcgg 208  Q
     ||||||||| ||||||||||||| ||  ||| ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  3400056 gatctcatgtaccgcgaaagaacacggccatgtccagcgatggcgaccccaatgtgatcatcaatcttgaagatcttcgtctgatgataatataattcgg 3399957  T
Q  209 aattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctga 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  3399956 aattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctga 3399893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 194 - 403
Target Start/End: Complemental strand, 20863133 - 20862924
Alignment:
Q  194 gagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaaaagcttcgaa 293  Q
    ||||| |||||| | | |||||||||||||||| |||| |||||||| ||||||||||||||||||| | ||||||||||| |||||| |  |||||||     
T  20863133 gagaagataattggtatttggctttgttaacacgcgcgggaaccacgcgagttttggatcggagactcattgctgctgaacgttgcttgactgcttcgat 20863034  T
Q  294 ttccgccttaagtgcttcaatggggtatttcaccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaaga 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  20863033 ttccgccttaagtgcttcaatggggtatttcaccggtgaccatgtttttaagttggtatggcatagatttctaaacatctccgcgttctcctcctcaaga 20862934  T
Q  394 gaagataatt 403  Q
    ||||||||||    
T  20862933 gaagataatt 20862924  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 3399087 - 3398983
Alignment:
Q  179 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 278  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399087 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3398988  T
Q  279 cttaa 283  Q
    |||||    
T  3398987 cttaa 3398983  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 3399318 - 3399214
Alignment:
Q  179 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 278  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399318 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3399219  T
Q  279 cttaa 283  Q
    |||||    
T  3399218 cttaa 3399214  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 3399549 - 3399445
Alignment:
Q  179 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 278  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399549 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3399450  T
Q  279 cttaa 283  Q
    |||||    
T  3399449 cttaa 3399445  T

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Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 3399760 - 3399658
Alignment:
Q  181 atcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgct 280  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||||    
T  3399760 atcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttgct 3399661  T
Q  281 taa 283  Q
    |||    
T  3399660 taa 3399658  T

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Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 3398856 - 3398777
Alignment:
Q  179 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggaga 258  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3398856 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggaga 3398777  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 3398907 - 3398785
Alignment:
Q  326 ccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtatttggctttgttaacacg 425  Q
    |||||||||||||||||| || ||||||| || |||||||||||||||| | | ||| ||  | | |||||||||||| | | ||||||||||||||||     
T  3398907 ccggtgaccatgttgctacgtcggtatggtattgatttctaaacatctccgagatcttcttctgacgagaagataattcggaattggctttgttaacaca 3398808  T
Q  426 cgcgggaaccacgcgagttttgg 448  Q
    ||||||||||||| |||||||||    
T  3398807 cgcgggaaccacgtgagttttgg 3398785  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 3399138 - 3399016
Alignment:
Q  326 ccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtatttggctttgttaacacg 425  Q
    |||||||||||||||||| || ||||||| || |||||||||||||||| | | ||| ||  | | |||||||||||| | | ||||||||||||||||     
T  3399138 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccgagatcttcttctgacgagaagataattcggaattggctttgttaacaca 3399039  T
Q  426 cgcgggaaccacgcgagttttgg 448  Q
    ||||||||||||| |||||||||    
T  3399038 cgcgggaaccacgtgagttttgg 3399016  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 3399369 - 3399247
Alignment:
Q  326 ccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtatttggctttgttaacacg 425  Q
    |||||||||||||||||| || ||||||| || |||||||||||||||| | | ||| ||  | | |||||||||||| | | ||||||||||||||||     
T  3399369 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccgagatcttcttctgacgagaagataattcggaattggctttgttaacaca 3399270  T
Q  426 cgcgggaaccacgcgagttttgg 448  Q
    ||||||||||||| |||||||||    
T  3399269 cgcgggaaccacgtgagttttgg 3399247  T

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Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 3399600 - 3399478
Alignment:
Q  326 ccggtgaccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtatttggctttgttaacacg 425  Q
    |||||||||||||||||| || ||||||| || |||||||||||||||| | | ||| ||  | | |||||||||||| | | ||||||||||||||||     
T  3399600 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccgagatcttcttctgacgagaagataattcggaattggctttgttaacaca 3399501  T
Q  426 cgcgggaaccacgcgagttttgg 448  Q
    ||||||||||||| |||||||||    
T  3399500 cgcgggaaccacgtgagttttgg 3399478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 448
Target Start/End: Complemental strand, 3399806 - 3399691
Alignment:
Q  333 ccatgttgctaagttggtatggcatagatttctaaacatctcagcgttctcctcttcaagagaagataattggtatttggctttgttaacacgcgcggga 432  Q
    ||||| ||||| || ||||||| || |||||||||||||||| |   ||| ||  | | |||||||||||| | | |||||||||||||||| |||||||    
T  3399806 ccatggtgctacgtcggtatggtattgatttctaaacatctccgatatcttcttctgacgagaagataattcggaattggctttgttaacacacgcggga 3399707  T
Q  433 accacgcgagttttgg 448  Q
    |||||| |||||||||    
T  3399706 accacgtgagttttgg 3399691  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 3399954 - 3399893
Alignment:
Q  409 ttggctttgttaacacgcgcgggaaccacgcgagttttgggtgggagactcattgctgctga 470  Q
    |||||||||||||||| |||| |||||||| ||||||||| | ||||||  |||||||||||    
T  3399954 ttggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctga 3399893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 3398907 - 3398857
Alignment:
Q  524 ccggtgaccatgtttctaagttggtatggcatagatttctaaacatctccg 574  Q
    |||||||||||||| ||| || ||||||| || ||||||||||||||||||    
T  3398907 ccggtgaccatgttgctacgtcggtatggtattgatttctaaacatctccg 3398857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 3399138 - 3399088
Alignment:
Q  524 ccggtgaccatgtttctaagttggtatggcatagatttctaaacatctccg 574  Q
    |||||||||||||| ||| || ||||||| || ||||||||||||||||||    
T  3399138 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccg 3399088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 3399369 - 3399319
Alignment:
Q  524 ccggtgaccatgtttctaagttggtatggcatagatttctaaacatctccg 574  Q
    |||||||||||||| ||| || ||||||| || ||||||||||||||||||    
T  3399369 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccg 3399319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 574
Target Start/End: Complemental strand, 3399600 - 3399550
Alignment:
Q  524 ccggtgaccatgtttctaagttggtatggcatagatttctaaacatctccg 574  Q
    |||||||||||||| ||| || ||||||| || ||||||||||||||||||    
T  3399600 ccggtgaccatgttgctatgtcggtatggtattgatttctaaacatctccg 3399550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 7133722 - 7134005
Alignment:
Q  9 aacggagagtaacctaacctgagccttattggcgagctgaacaacgagacgatcaacgggaagcagagatttataagtgaaattatagttaatgcattca 108  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||  | |||| ||||||| ||||||||||||||||||||    
T  7133722 aacggagagtgacctaacctgagccttatcggcgagctgaacaacgagacgaccaacaggaagaggcgattcataagtgtaattatagttaatgcattca 7133821  T
Q  109 tatctcatgtgccgcgaaagaacatggttat---------gaccagcgatggcgatcccgatgtgattatcaatcttgtagatcttcgtctgatgagaat 199  Q
     ||||||||| ||| ||||||||| ||  ||         |||| |||||||| |  |||||||||| ||||| |||  |||||||| |||||||||||     
T  7133822 gatctcatgtaccgggaaagaacacggccatcggcggtgagaccggcgatggcaacaccgatgtgatcatcaaccttaaagatcttcttctgatgagaag 7133921  T
Q  200 ataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  7133922 ataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctgaaccttgcttaa 7134005  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 488
Target Start/End: Original strand, 7133916 - 7134012
Alignment:
Q  392 gagaagataattggtatttggctttgttaacacgcgcgggaaccacgcgagttttgggtgggagactcattgctgctgaaagttgcttagctgcttc 488  Q
    |||||||||||| | | |||||||||||||||| |||| |||||||| ||||||||| | ||||||  ||||||||||||  ||||||| |||||||    
T  7133916 gagaagataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctgaaccttgcttaactgcttc 7134012  T

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