View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4505-Insertion-7 (Length: 370)
Name: NF4505-Insertion-7
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505-Insertion-7 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Original strand, 30550582 - 30550944
Alignment:
| Q |
8 |
cataaacacctaatttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30550582 |
cataaacacctaatttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcat |
30550681 |
T |
|
| Q |
108 |
atacaacctaatcataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtcc |
207 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30550682 |
atacaacctaatcataaaacaaagataaatcagacctgaaaatcgaaatcgaaaactaaacagaagcagaaaatcgaagacgaaacttgtatcaacgtcc |
30550781 |
T |
|
| Q |
208 |
attctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30550782 |
attctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcctctaaagagaaactctcaacctgatatttat |
30550881 |
T |
|
| Q |
308 |
gttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30550882 |
gttttggtctaagcatatctaactgaaaaccctgtgattttcttttcttgctccattcaataa |
30550944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 27690398 - 27690049
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27690398 |
tttttcttcatcttcttccccctttgtcaacatcatgctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacccaatc |
27690299 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
27690298 |
ataaatcgaagataaatcagacctgaaaaacgaaatcgaaaactgaacagaagcagaaaatcgaagacgagacttgtatcaacgtccattctgctattaa |
27690199 |
T |
|
| Q |
221 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaag |
320 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27690198 |
ccgtgtggttgttcacacttcaaaaaaatggacttccatcagatattgatgtatcttctaaagagaaactctcaacccgatatttatgttttggtctaag |
27690099 |
T |
|
| Q |
321 |
catatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
27690098 |
catatctaactgaaaaccttgtaattttcttttcttgcaccattcaataa |
27690049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 22765848 - 22766196
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
22765848 |
tttttcttcatcttcttcccccttcttcaacatcatgctcaagaacaaaaatccaacaccccataaactaaacacaaacgaaagcatatacaacc-aatc |
22765946 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22765947 |
ataaatcgaagataaatcagacctgaaaatcgaaatcgaaaacgcaacagaagcagaaaattgaagacgaaacttgtatcaacgtccattctgctattaa |
22766046 |
T |
|
| Q |
221 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
22766047 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcttctaaagagaaactctcaacccgatatttatgttttggtttaag |
22766146 |
T |
|
| Q |
321 |
catatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
22766147 |
catatctaacagaaaaccctataattttcttttcttgctctattcaataa |
22766196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 37623597 - 37623891
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623597 |
tttttcttcatcttcttcccc----ttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
37623692 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623693 |
ataaaccgaagataaatcagacctgaaattcgaaataaaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
37623792 |
T |
|
| Q |
221 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623793 |
ccgtgtggttgttcacacttcaaaaaattggacttccattatatattaatgtatcttataaagagaaactctcaacctgatatttatgttttggtctaa |
37623891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 5536648 - 5536694
Alignment:
| Q |
9 |
ataaacacctaatttttcttcatcttcttcccccttcttcaacatcat |
56 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
5536648 |
ataaacacctaatttttctgcatcttatt-ccccttcttcaacatcat |
5536694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 37467073 - 37467118
Alignment:
| Q |
9 |
ataaacacctaatttttcttcatcttcttcccccttcttcaacatcat |
56 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
37467073 |
ataaacacctaatttttctgcatct--tttccccttcttcaacatcat |
37467118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 49837646 - 49837689
Alignment:
| Q |
12 |
aacacctaatttttcttcatcttcttcccccttcttcaacatcat |
56 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
49837646 |
aacacctaatttttctgcatcttatt-ccccttcttcaacatcat |
49837689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 41295452 - 41295801
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41295452 |
tttttcttcattttcttcccccttcttcaacatcattttcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
41295551 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41295552 |
ataaaccgaagataaatcagacctgaaattcgaaatcgaaaactaaacagaagcggaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
41295651 |
T |
|
| Q |
221 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41295652 |
ccgtgtggttgttcacacttcaaaaaattggacttccattagatatttatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaag |
41295751 |
T |
|
| Q |
321 |
catatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41295752 |
catatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
41295801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 45048574 - 45048497
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaa |
98 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
45048574 |
tttttcttcatcttcttcccctttcttcaacatcacgctcaagaacaaaaatccaacaacccagaaattgaacacaaa |
45048497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 35800771 - 35800696
Alignment:
| Q |
39 |
ccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |||| || |||||||||||| |||||||||||||| |
|
|
| T |
35800771 |
ccccttcttcaacatcacactcaagaacaaaaatgcaacatcccaagaattgaacacaaacg-aagcatatacaacc |
35800696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 34901999 - 34902342
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34901999 |
tttttcttcatcttcttcccccttgttcaacatcatgctcaagaacaaaaatccaacaccccttaaactgatcacaaacgaaagcatatacaacctaatc |
34902098 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
34902099 |
ataaatcgaagataaataacacctgaaa------atcgaaaactgaacagaagcagaaaatcgaagacgaaatttgtatcaacatccattctgctattaa |
34902192 |
T |
|
| Q |
221 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtctaag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
34902193 |
ccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcttctaaagagaaactctcaacccgatattaatgttttggtctaag |
34902292 |
T |
|
| Q |
321 |
catatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34902293 |
catatctaactgaaaaccctgtaattttcttttcttactccattcaataa |
34902342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 15791282 - 15791237
Alignment:
| Q |
9 |
ataaacacctaatttttcttcatcttcttcccccttcttcaacatcat |
56 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
15791282 |
ataaacacctaatttttctgcatct--tttccccttcttcaacatcat |
15791237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 13360703 - 13360903
Alignment:
| Q |
21 |
tttttcttcatcttcttcccccttcttcaacatcattctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13360703 |
tttttcttcatctttttcccccttcttcaacatcatgctcaagaacaaaaatccaacaccccataaactgaacacaaacgaaagcatatacaacctaatc |
13360802 |
T |
|
| Q |
121 |
ataaaccgaagataaatctgacctgaaattcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattctgctgttaa |
220 |
Q |
| |
|
||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13360803 |
ataaatctaagataaatcagacctgaaaatcgaaatcgaaaactgaacagaagcagaaaatcgaagacgaaacttgtatcaacgtccattatgctattaa |
13360902 |
T |
|
| Q |
221 |
c |
221 |
Q |
| |
|
| |
|
|
| T |
13360903 |
c |
13360903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 217 - 370
Target Start/End: Original strand, 13362783 - 13362936
Alignment:
| Q |
217 |
ttaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctgatatttatgttttggtc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
13362783 |
ttaaccgtgtggttgttcacacttcaaaaaattggacttccatcaaatattgatgtatcttctaaagagaaactctcaactcgatatttatattttggtc |
13362882 |
T |
|
| Q |
317 |
taagcatatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13362883 |
taagcatatctaactgaaaaccctgtaattttcttttgttgctccattcaataa |
13362936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 200 - 370
Target Start/End: Original strand, 22608213 - 22608383
Alignment:
| Q |
200 |
caacgtccattctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattaatgtatcttctaaagagaaactctcaacctg |
299 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
22608213 |
caacatccattctgctattaaccgtgtggttgttcgcactaccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
22608312 |
T |
|
| Q |
300 |
atatttatgttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttgctccattcaataa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22608313 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttgttccattcaataa |
22608383 |
T |
|
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 29261127 - 29261082
Alignment:
| Q |
9 |
ataaacacctaatttttcttcatcttcttcccccttcttcaacatcat |
56 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
29261127 |
ataaacacctaatttttctgcatct--tttccccttcttcaacatcat |
29261082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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