View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4505-Insertion-9 (Length: 178)

Name: NF4505-Insertion-9
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4505-Insertion-9
NF4505-Insertion-9
[»] chr5 (10 HSPs)
chr5 (8-178)||(12046206-12046377)
chr5 (76-119)||(7392059-7392102)
chr5 (76-119)||(34378108-34378151)
chr5 (81-119)||(13954267-13954305)
chr5 (81-119)||(26045997-26046035)
chr5 (81-114)||(698376-698409)
chr5 (76-120)||(23426353-23426397)
chr5 (76-107)||(7195267-7195298)
chr5 (76-119)||(22675352-22675395)
chr5 (83-114)||(39184222-39184253)
[»] chr2 (11 HSPs)
chr2 (81-151)||(9560821-9560891)
chr2 (81-151)||(4162053-4162122)
chr2 (76-120)||(22885161-22885205)
chr2 (76-119)||(14405208-14405251)
chr2 (81-151)||(44888352-44888422)
chr2 (81-114)||(10524112-10524145)
chr2 (83-119)||(1269493-1269529)
chr2 (85-145)||(8520386-8520446)
chr2 (76-119)||(7874301-7874344)
chr2 (76-119)||(14106552-14106595)
chr2 (81-120)||(15126443-15126482)
[»] chr6 (9 HSPs)
chr6 (64-143)||(34105399-34105477)
chr6 (83-114)||(7546464-7546495)
chr6 (127-166)||(14279671-14279710)
chr6 (76-119)||(26216047-26216090)
chr6 (84-113)||(13423482-13423511)
chr6 (83-132)||(20499916-20499965)
chr6 (76-120)||(26534747-26534791)
chr6 (76-120)||(32935367-32935411)
chr6 (88-119)||(3880623-3880654)
[»] chr7 (18 HSPs)
chr7 (84-151)||(25153199-25153265)
chr7 (81-151)||(27993569-27993639)
chr7 (81-119)||(3478362-3478400)
chr7 (76-120)||(12480895-12480939)
chr7 (76-120)||(38485565-38485609)
chr7 (76-119)||(6584919-6584962)
chr7 (76-119)||(34389972-34390015)
chr7 (76-119)||(41089776-41089819)
chr7 (76-114)||(8745168-8745206)
chr7 (81-119)||(9349759-9349797)
chr7 (76-114)||(10244197-10244235)
chr7 (76-114)||(13311854-13311892)
chr7 (81-119)||(24324831-24324869)
chr7 (81-151)||(46262152-46262222)
chr7 (76-119)||(3419684-3419727)
chr7 (76-107)||(6716764-6716795)
chr7 (83-114)||(17802851-17802882)
chr7 (83-114)||(25160830-25160861)
[»] chr3 (18 HSPs)
chr3 (81-119)||(23328383-23328421)
chr3 (10-175)||(30127216-30127377)
chr3 (81-151)||(20710741-20710811)
chr3 (81-119)||(40023605-40023643)
chr3 (76-119)||(9584081-9584124)
chr3 (76-119)||(19176512-19176555)
chr3 (76-119)||(33143977-33144020)
chr3 (76-119)||(43012385-43012428)
chr3 (84-119)||(45398806-45398841)
chr3 (81-119)||(14879445-14879483)
chr3 (76-114)||(17550972-17551010)
chr3 (81-114)||(34475787-34475820)
chr3 (76-113)||(47945722-47945759)
chr3 (86-114)||(2392544-2392572)
chr3 (86-114)||(2394291-2394319)
chr3 (76-116)||(37123395-37123435)
chr3 (126-161)||(7170907-7170942)
chr3 (76-119)||(14755293-14755336)
[»] chr4 (11 HSPs)
chr4 (81-143)||(40813814-40813876)
chr4 (76-120)||(16501740-16501784)
chr4 (83-143)||(53756743-53756802)
chr4 (83-114)||(21387239-21387270)
chr4 (76-119)||(53823449-53823492)
chr4 (84-118)||(26474847-26474881)
chr4 (83-145)||(31050697-31050759)
chr4 (81-114)||(39421046-39421079)
chr4 (64-152)||(32057090-32057177)
chr4 (64-107)||(2792291-2792333)
chr4 (76-119)||(25753182-25753225)
[»] chr8 (9 HSPs)
chr8 (76-116)||(10248581-10248621)
chr8 (76-118)||(16457489-16457530)
chr8 (76-114)||(24995423-24995461)
chr8 (76-114)||(31207390-31207428)
chr8 (76-120)||(15906695-15906739)
chr8 (76-119)||(15821407-15821450)
chr8 (76-119)||(17657030-17657073)
chr8 (76-123)||(23264712-23264759)
chr8 (81-132)||(32945736-32945787)
[»] chr1 (20 HSPs)
chr1 (83-119)||(6583251-6583287)
chr1 (76-119)||(46814495-46814538)
chr1 (81-119)||(7857663-7857701)
chr1 (83-169)||(27335522-27335608)
chr1 (85-119)||(27905422-27905456)
chr1 (76-114)||(31585788-31585826)
chr1 (76-114)||(41920467-41920505)
chr1 (81-114)||(5459176-5459209)
chr1 (85-114)||(18787241-18787270)
chr1 (84-137)||(22200000-22200053)
chr1 (59-112)||(30655577-30655629)
chr1 (81-114)||(46692852-46692885)
chr1 (76-120)||(4651789-4651833)
chr1 (76-120)||(38544766-38544810)
chr1 (76-107)||(5389449-5389480)
chr1 (81-112)||(9081538-9081569)
chr1 (67-114)||(15840932-15840978)
chr1 (83-118)||(24449965-24450000)
chr1 (76-119)||(24658939-24658982)
chr1 (76-107)||(27102213-27102244)
[»] scaffold0620 (1 HSPs)
scaffold0620 (64-114)||(3845-3894)
[»] scaffold1613 (1 HSPs)
scaffold1613 (76-120)||(1045-1089)
[»] scaffold0200 (1 HSPs)
scaffold0200 (83-119)||(19393-19429)
[»] scaffold0119 (1 HSPs)
scaffold0119 (83-119)||(42173-42209)
[»] scaffold0063 (1 HSPs)
scaffold0063 (83-119)||(58137-58173)
[»] scaffold1030 (1 HSPs)
scaffold1030 (127-166)||(1825-1864)
[»] scaffold0068 (1 HSPs)
scaffold0068 (81-112)||(35804-35835)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 3e-71; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 12046377 - 12046206
Alignment:
Q  8 ttatcaacccccattttgctagaaaagacaccaaaacaagactaaaaa-gaaacttggagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcg 106  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12046377 ttatcaacccccattttgctagaaaagacaccaaaactagcctaaaaaagaaacttggagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcg 12046278  T
Q  107 gtccaccaaacttccgagtcaaatcactaaggcaccccttaactcctggaccactagagaagagaccttgac 178  Q
    | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  12046277 gcccaccaaacttccgaatcaaatcactatggcaccccttaactcctggaccaccagagaagacaccttgac 12046206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 7392059 - 7392102
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  7392059 ctgactcccgatctcgaatcaaaagtgatcggtccaccagactt 7392102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 34378151 - 34378108
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  34378151 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 34378108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 13954267 - 13954305
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  13954267 tcccgatctcgaatcaaaagtgatcggcccaccagactt 13954305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 26045997 - 26046035
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  26045997 tcccgatctcgaatcaaaagtgatcggttcaccagactt 26046035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 698409 - 698376
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||||||||||||||||||| |||||||||||||    
T  698409 tcccgatctcgaatcaaaagagatcggtccacca 698376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 23426397 - 23426353
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||| ||||||||||||||||| ||||||||||| |||||    
T  23426397 ctgactcccaatctcgaatcaaaagtgttcggtccaccagacttc 23426353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 7195267 - 7195298
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcgg 107  Q
    |||| |||||||||||||||||||||||||||    
T  7195267 ctgactcccgatctcgaatcaaaagtgatcgg 7195298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 22675352 - 22675395
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||  ||||||||||||| ||||    
T  22675352 ctgactcccgatctcgaatcaaaatcgatcggtccaccagactt 22675395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 39184222 - 39184253
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||| ||||||    
T  39184222 ccgatctcgaatcaaaagtgatcggcccacca 39184253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 4e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 9560821 - 9560891
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||  ||||||||||| |||||    
T  9560821 tcccgatctcgaatcaaaagtgatcggtccaccaaactttcgacacaaatcatcaaggcacccctcaactc 9560891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 4162053 - 4162122
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    ||||||||||||||||||||||||||| |||||| ||| || |  ||||||||| |||||||||| |||||    
T  4162053 tcccgatctcgaatcaaaagtgatcggcccaccagactcccaacacaaatcact-aggcacccctcaactc 4162122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 22885161 - 22885205
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||    
T  22885161 ctgactcccgatctcgaatcaaaagtgatcggcccaccagacttc 22885205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 14405251 - 14405208
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  14405251 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 14405208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 44888352 - 44888422
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    |||| ||||||||| |||| ||||||| |||||||||| ||||   |||||| |||||||||||| |||||    
T  44888352 tcccaatctcgaataaaaaatgatcggcccaccaaactcccgacataaatcaataaggcacccctcaactc 44888422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 10524145 - 10524112
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||| ||||||    
T  10524145 tcccgatctcgaatcaaaagtgatcggcccacca 10524112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 1269529 - 1269493
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  1269529 ccgatctcgaatcaaaagtgatcggcccaccagactt 1269493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 8520446 - 8520386
Alignment:
Q  85 gatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcacccct 145  Q
    |||||||||||||||||||| |||||| || |||   ||  ||||||||||||||||||||    
T  8520446 gatctcgaatcaaaagtgattggtccatcagactctagaaacaaatcactaaggcacccct 8520386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 7874344 - 7874301
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||  |||||| ||||    
T  7874344 ctgactcccgatctcgaatcaaaagtgatcgacccaccagactt 7874301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 14106552 - 14106595
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||| ||||||||||||||||| |||||| ||||    
T  14106552 ctgactcccgatcttgaatcaaaagtgatcggcccaccagactt 14106595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 15126443 - 15126482
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    ||||||||||||||||||| ||||||| |||||| |||||    
T  15126443 tcccgatctcgaatcaaaaatgatcggcccaccagacttc 15126482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 34105477 - 34105399
Alignment:
Q  64 gagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccc 143  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||   ||  ||||||||||||||||||    
T  34105477 gagtcaagaaa-ctgactcccgatctcgaatcaaaagtgatcggcccaccaaactctagaaacaaatcactaaggcaccc 34105399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 7546464 - 7546495
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||||||||    
T  7546464 ccgatctcgaatcaaaagtgatcggtccacca 7546495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 14279671 - 14279710
Alignment:
Q  127 aaatcactaaggcaccccttaactcctggaccactagaga 166  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  14279671 aaatcactaaggcacctctcaactcctggaccactagaga 14279710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 26216047 - 26216090
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  26216047 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 26216090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 13423511 - 13423482
Alignment:
Q  84 cgatctcgaatcaaaagtgatcggtccacc 113  Q
    ||||||||||||||||||||||||||||||    
T  13423511 cgatctcgaatcaaaagtgatcggtccacc 13423482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 20499965 - 20499916
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatca 132  Q
    |||||||||||||||||| ||||||||||||| ||| | || ||||||||    
T  20499965 ccgatctcgaatcaaaagcgatcggtccaccatactccagaatcaaatca 20499916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 26534747 - 26534791
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||| |||||||||||||||||||||| |||||| |||||    
T  26534747 ctgactcccaatctcgaatcaaaagtgatcggcccaccagacttc 26534791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 32935367 - 32935411
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||||| |||||| |||||| |||||    
T  32935367 ctgactcccgatctcgaatcaaaagcgatcggcccaccagacttc 32935411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 3880623 - 3880654
Alignment:
Q  88 ctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||| |||||||||||    
T  3880623 ctcgaatcaaaagtgatcggcccaccaaactt 3880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 25153265 - 25153199
Alignment:
Q  84 cgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    ||||||||||||||||||||||||||||||| ||| ||||  ||||||| ||| ||||||||||||||    
T  25153265 cgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcattaa-gcaccccttaactc 25153199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 27993569 - 27993639
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    |||||||||||||||||||||||||||||||||| ||| ||||  |||||||  ||| ||||||| |||||    
T  27993569 tcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactc 27993639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 3478400 - 3478362
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3478400 tcccgatctcgaatcaaaagtgatcggcccaccaaactt 3478362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 12480939 - 12480895
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||    
T  12480939 ctgactcccgatctcgaatcaaaagcgatcggcccaccaaacttc 12480895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 38485609 - 38485565
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||    
T  38485609 ctgactcccgatctcgaatcaaaagtgatcggcccaccagacttc 38485565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 6584962 - 6584919
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  6584962 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 6584919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 34390015 - 34389972
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  34390015 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 34389972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 41089776 - 41089819
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||    
T  41089776 ctgactcccaatctcgaatcaaaagtgatcggtccaccagactt 41089819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 8745206 - 8745168
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  8745206 ctgaatcccgatctcgaatcaaaagtgatcggcccacca 8745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 9349797 - 9349759
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  9349797 tcccgatctcgaatcaaaagtgatcggcccaccagactt 9349759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 10244235 - 10244197
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  10244235 ctgactcccgatctcgaatcaaaagtgatcggcccacca 10244197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 13311892 - 13311854
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  13311892 ctgactcccgatctcgaatcaaaagtgatcggcccacca 13311854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 24324831 - 24324869
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  24324831 tcccgatctcgaatcaaaattgatcggcccaccaaactt 24324869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 46262152 - 46262222
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    ||||||||||||||||||||||||||| |||||| ||| || |  | |||||  ||||||||||| |||||    
T  46262152 tcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctcaactc 46262222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 3419684 - 3419727
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||| | |||||| ||||    
T  3419684 ctgactcccgatctcgaatcaaaagtgatcagcccaccacactt 3419727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 6716764 - 6716795
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcgg 107  Q
    |||| |||||||||||||||||||||||||||    
T  6716764 ctgactcccgatctcgaatcaaaagtgatcgg 6716795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 17802851 - 17802882
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||| ||||||    
T  17802851 ccgatctcgaatcaaaagtgatcggcccacca 17802882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 114
Target Start/End: Complemental strand, 25160861 - 25160830
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||| ||||||||||||    
T  25160861 ccgatctcgaatcaaaagtaatcggtccacca 25160830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 23328383 - 23328421
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23328383 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 23328421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 30127377 - 30127216
Alignment:
Q  10 atcaacccccattttgctagaaaagacaccaaaacaagactaaaaagaaacttggagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtc 109  Q
    ||||||||| | |||| | || |||| ||||||||||| |||||||   ||||| |||||||| | |||| |||||||||||||||||||| ||||||      
T  30127377 atcaaccccaagtttgttggagaagagaccaaaacaagcctaaaaa---acttg-agtcaagagaactgactcccgatctcgaatcaaaagcgatcggct 30127282  T
Q  110 caccaaacttccgagtcaaatcactaaggcaccccttaactcctggaccactagagaagagacctt 175  Q
    ||||| ||| ||||  ||||||| ||  |||||||| || ||||  ||||||| || ||| |||||    
T  30127281 caccagactcccgaaacaaatcaatagagcacccctcaattcctaaaccactatagcagacacctt 30127216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 20710741 - 20710811
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactc 151  Q
    ||||||||||||||||||||||||||| |||||| |||||| | | |||  | |||||||||||| |||||    
T  20710741 tcccgatctcgaatcaaaagtgatcggcccaccagacttccaacttaaactaataaggcacccctcaactc 20710811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 40023605 - 40023643
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  40023605 tcccgatctcgaatcaaaagtgatcggtccaccagactt 40023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 9584081 - 9584124
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||    
T  9584081 ctgactcccgatctcgaatcaaaagtgatcgatccaccagactt 9584124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 19176555 - 19176512
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  19176555 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 19176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 33143977 - 33144020
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||    
T  33143977 ctgactcccgatctcgaatcaaaagtgatcgatccaccagactt 33144020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 43012428 - 43012385
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  43012428 ctgactcccgatctcgaatcaaaagtgatcgggccaccagactt 43012385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 45398841 - 45398806
Alignment:
Q  84 cgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||||||| ||||    
T  45398841 cgatctcgaatcaaaagtgatcggtccaccagactt 45398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 14879483 - 14879445
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  14879483 tcccgatctcgaatcaaaagtgatcggcccaccagactt 14879445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 17551010 - 17550972
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  17551010 ctgactcccgatctcgaatcaaaagtgatcggcccacca 17550972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 34475787 - 34475820
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||| ||||||    
T  34475787 tcccgatctcgaatcaaaagtgatcggcccacca 34475820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 47945759 - 47945722
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacc 113  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  47945759 ctgactcccgatctcgaatcaaaagtgatcggcccacc 47945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 2392544 - 2392572
Alignment:
Q  86 atctcgaatcaaaagtgatcggtccacca 114  Q
    |||||||||||||||||||||||||||||    
T  2392544 atctcgaatcaaaagtgatcggtccacca 2392572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 2394291 - 2394319
Alignment:
Q  86 atctcgaatcaaaagtgatcggtccacca 114  Q
    |||||||||||||||||||||||||||||    
T  2394291 atctcgaatcaaaagtgatcggtccacca 2394319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 37123435 - 37123395
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaa 116  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  37123435 ctgactcccaatctcgaatcaaaagtgatcggcccaccaaa 37123395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 7170907 - 7170942
Alignment:
Q  126 caaatcactaaggcaccccttaactcctggaccact 161  Q
    |||||||||||||||||||| ||||||| |||||||    
T  7170907 caaatcactaaggcacccctcaactcctagaccact 7170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 14755293 - 14755336
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||| ||||||||||||||||| |||||| ||||    
T  14755293 ctgactcccgatcttgaatcaaaagtgatcggcccaccagactt 14755336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 40813814 - 40813876
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccc 143  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||  |||||||  |||||||||    
T  40813814 tcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcaccc 40813876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 16501784 - 16501740
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||||| |||||| ||||||||||||    
T  16501784 ctgactcccgatctcgaatcaaaagcgatcggcccaccaaacttc 16501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 53756802 - 53756743
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccc 143  Q
    ||||||||||||||||||||||||| |||||| |||| |||  ||||||| ||||||||||    
T  53756802 ccgatctcgaatcaaaagtgatcggcccaccagactt-cgatgcaaatcaataaggcaccc 53756743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 21387239 - 21387270
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||||||||    
T  21387239 ccgatctcgaatcaaaagtgatcggtccacca 21387270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 53823449 - 53823492
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||    
T  53823449 ctgactcccgatctcgaatcaaaagtgattggtccaccagactt 53823492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 26474881 - 26474847
Alignment:
Q  84 cgatctcgaatcaaaagtgatcggtccaccaaact 118  Q
    |||||||||||||||||||||||| ||||||||||    
T  26474881 cgatctcgaatcaaaagtgatcggcccaccaaact 26474847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 31050697 - 31050759
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcacccct 145  Q
    ||||||||||||||||||||||||| |||||| ||||  ||  ||||||| || |||||||||    
T  31050697 ccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagtagggcacccct 31050759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 39421046 - 39421079
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||| ||||||    
T  39421046 tcccgatctcgaatcaaaagtgatcggcccacca 39421079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 32057177 - 32057090
Alignment:
Q  64 gagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactcc 152  Q
    ||||||||||| |||| | |||||||| |||||||||||||||  | || |||||||  |  ||||||| ||||||| |||||||||||    
T  32057177 gagtcaagaaa-ctgacttccgatctcaaatcaaaagtgatcgtccaactaaacttcataaacaaatcattaaggcaacccttaactcc 32057090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 2792291 - 2792333
Alignment:
Q  64 gagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcgg 107  Q
    ||||||||||| |||| | |||||||||||||||||||||||||    
T  2792291 gagtcaagaaa-ctgacttccgatctcgaatcaaaagtgatcgg 2792333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 25753225 - 25753182
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||  |||||| ||||    
T  25753225 ctgactcccgatctcgaatcaaaagtgatcgccccaccagactt 25753182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 10248581 - 10248621
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaa 116  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  10248581 ctgactcccgatcttgaatcaaaagtgatcggtccaccaaa 10248621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 16457489 - 16457530
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaact 118  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  16457489 ctgactcccgatctcgaatcaaaagtgatcgg-ccaccaaact 16457530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 24995423 - 24995461
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  24995423 ctgactcccgatctcgaatcaaaagtgatcggcccacca 24995461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 31207390 - 31207428
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  31207390 ctgactcccgatctcgaatcaaaagtgatcggcccacca 31207428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 15906739 - 15906695
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||| |||||||| |||||| |||||    
T  15906739 ctgactcccgatctcgaatcaaatgtgatcggcccaccagacttc 15906695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 15821407 - 15821450
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||| | |||||| ||||    
T  15821407 ctgactcccgatctcgaatcaaaagtgatcagcccaccagactt 15821450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 17657030 - 17657073
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||  |||||| ||||    
T  17657030 ctgactcccgatctcgaatcaaaagtgatcgacccaccatactt 17657073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 23264759 - 23264712
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttccga 123  Q
    |||| ||||||||||||||||||| |||| |||||| || ||||||||    
T  23264759 ctgactcccgatctcgaatcaaaattgataggtccatcagacttccga 23264712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 32945736 - 32945787
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatca 132  Q
    ||||||||||||||||||||||||| | |||| | ||||| || ||||||||    
T  32945736 tcccgatctcgaatcaaaagtgatcagcccactatacttcagaatcaaatca 32945787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 6583251 - 6583287
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6583251 ccgatctcgaatcaaaagtgatcggtccaccagactt 6583287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 46814495 - 46814538
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||    
T  46814495 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactt 46814538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 7857701 - 7857663
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  7857701 tcccgatctcgaatcaaaagtgatcggcccaccagactt 7857663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 27335522 - 27335608
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaaggcaccccttaactcctggaccactagagaaga 169  Q
    ||||||||||| |||||||||||||||||||| ||  |  |  ||||||||||||| |||||||| ||||    |||||||||||||    
T  27335522 ccgatctcgaaccaaaagtgatcggtccaccatacaacaaaaacaaatcactaaggtaccccttacctcccaatccactagagaaga 27335608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 27905456 - 27905422
Alignment:
Q  85 gatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||||||||||||||||||||||||||||| ||||    
T  27905456 gatctcgaatcaaaagtgatcggtccaccagactt 27905422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 31585788 - 31585826
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  31585788 ctgactcccgatctcgaatcaaaagtgatcggcccacca 31585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 41920505 - 41920467
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  41920505 ctgactcccgatctcgaatcaaaagtgatcggcccacca 41920467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 5459209 - 5459176
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||| ||||||    
T  5459209 tcccgatctcgaatcaaaagtgatcggcccacca 5459176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 18787241 - 18787270
Alignment:
Q  85 gatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||||||    
T  18787241 gatctcgaatcaaaagtgatcggtccacca 18787270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 22200053 - 22200000
Alignment:
Q  84 cgatctcgaatcaaaagtgatcggtccaccaaacttccgagtcaaatcactaag 137  Q
    |||||| ||||||||||||||||||||| || ||| | ||||||||||| ||||    
T  22200053 cgatcttgaatcaaaagtgatcggtccatcagactccagagtcaaatcagtaag 22200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 30655629 - 30655577
Alignment:
Q  59 acttggagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtccac 112  Q
    |||||| ||||||||| |||| |||||||||||||||||||| |||||| ||||    
T  30655629 acttggggtcaagaaa-ctgactcccgatctcgaatcaaaagcgatcggcccac 30655577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 46692852 - 46692885
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||||||||||||||||||| ||||||    
T  46692852 tcccgatctcgaatcaaaagtgatcggcccacca 46692885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 4651833 - 4651789
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| ||||||||||||||||||||||||||| || ||| |||||    
T  4651833 ctgactcccgatctcgaatcaaaagtgatcggccccccagacttc 4651789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 38544766 - 38544810
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||||| |||||| |||||| |||||    
T  38544766 ctgactcccgatctcgaatcaaaagcgatcggcccaccagacttc 38544810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 5389449 - 5389480
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcgg 107  Q
    |||| |||||||||||||||||||||||||||    
T  5389449 ctgactcccgatctcgaatcaaaagtgatcgg 5389480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 9081538 - 9081569
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccac 112  Q
    |||||||||||||||||||||||||| |||||    
T  9081538 tcccgatctcgaatcaaaagtgatcgatccac 9081569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 15840932 - 15840978
Alignment:
Q  67 tcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    |||||||| |||| ||||||||||||||||||||||||| | ||||||    
T  15840932 tcaagaaa-ctgactcccgatctcgaatcaaaagtgatcagcccacca 15840978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 24449965 - 24450000
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaact 118  Q
    |||||||| |||||||||||||||| ||||||||||    
T  24449965 ccgatctcaaatcaaaagtgatcggcccaccaaact 24450000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 24658982 - 24658939
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    |||| |||||||||||||||||||||||| || |||||| ||||    
T  24658982 ctgactcccgatctcgaatcaaaagtgattggcccaccagactt 24658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 27102244 - 27102213
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcgg 107  Q
    |||| |||||||||||||||||||||||||||    
T  27102244 ctgactcccgatctcgaatcaaaagtgatcgg 27102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 3894 - 3845
Alignment:
Q  64 gagtcaagaaatctgagtcccgatctcgaatcaaaagtgatcggtccacca 114  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||| ||||||    
T  3894 gagtcaagaaa-ctgactcccgatctcgaatcaaaattgatcggcccacca 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 1045 - 1089
Alignment:
Q  76 ctgagtcccgatctcgaatcaaaagtgatcggtccaccaaacttc 120  Q
    |||| |||||||||||||||||||| |||||| |||||| |||||    
T  1045 ctgactcccgatctcgaatcaaaagcgatcggcccaccagacttc 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 19429 - 19393
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  19429 ccgatctcgaatcaaaagtgatcggcccaccagactt 19393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 42173 - 42209
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  42173 ccgatctcgaatcaaaagtgatcggcccaccagactt 42209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 58173 - 58137
Alignment:
Q  83 ccgatctcgaatcaaaagtgatcggtccaccaaactt 119  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  58173 ccgatcttgaatcaaaagtgatcggcccaccaaactt 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1030 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: scaffold1030
Description:

Target: scaffold1030; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 1864 - 1825
Alignment:
Q  127 aaatcactaaggcaccccttaactcctggaccactagaga 166  Q
    |||||||||||||||| || |||||| |||||||||||||    
T  1864 aaatcactaaggcacctctcaactcccggaccactagaga 1825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 35804 - 35835
Alignment:
Q  81 tcccgatctcgaatcaaaagtgatcggtccac 112  Q
    ||||||||||||||||||||||||||| ||||    
T  35804 tcccgatctcgaatcaaaagtgatcggcccac 35835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University