View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_high_13 (Length: 205)
Name: NF4505_high_13
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_high_13 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8259483 - 8259289
Alignment:
| Q |
11 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
110 |
Q |
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| T |
8259483 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
8259384 |
T |
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| Q |
111 |
gcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtc |
205 |
Q |
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| T |
8259383 |
gcaatggtggagggtagcgtgagggggagcattgtgtgcacaggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtc |
8259289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 8308942 - 8308748
Alignment:
| Q |
11 |
cacagatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgt |
110 |
Q |
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| T |
8308942 |
cacagctcaaacaataatggaacttgatatgtcccaacttgaccgtttatttgccgtcaatgtccgtggaatgtcgttgtgtgtgaaacacgcggcgcgt |
8308843 |
T |
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| Q |
111 |
gcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtc |
205 |
Q |
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| T |
8308842 |
gcaatggtagagggtcacgtaagggggagcatagtgtgtacagggagtgttggcggtagccggggaggctcgaggtcaacggattacacgatgtc |
8308748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 8257171 - 8256981
Alignment:
| Q |
15 |
gatcaaacagtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaa |
114 |
Q |
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| T |
8257171 |
gatcaaacaatcatggaacttgacatgtcccaatttgaccgtttatttgcggtcaatgttcaaggaatggcgttgtgtgtgaaacatgcagcacgtgcaa |
8257072 |
T |
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| Q |
115 |
tggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtc |
205 |
Q |
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| T |
8257071 |
tggtggagggtcgcataagggggagtatcgtatgcacagggagtgttagctgtcgtcaaggaggccccaggtcaacggactacacaatgtc |
8256981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 8289857 - 8289735
Alignment:
| Q |
39 |
atgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgaggggga |
138 |
Q |
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| T |
8289857 |
atgtcccaactagaccgtttattcacaatcaatgttcgaggaatggcattgtgtgtgaaacatgccgcacatgctatggtggaggggcgcattaggggga |
8289758 |
T |
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| Q |
139 |
gcattgtgtgcacgggaagtgtt |
161 |
Q |
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| T |
8289757 |
gtattgtgtgcacggggagtgtt |
8289735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 8261997 - 8261931
Alignment:
| Q |
85 |
cattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcac |
151 |
Q |
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| T |
8261997 |
cattgtgtgtgaaatacgcggcacgtgcgatggtggaggggcgcgtgaggggtagcattgtgtgcac |
8261931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 8325002 - 8324923
Alignment:
| Q |
72 |
gttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcac |
151 |
Q |
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| T |
8325002 |
gttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgtgaggggtagcattgtgtgcac |
8324923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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