View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4505_high_6 (Length: 348)

Name: NF4505_high_6
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4505_high_6
NF4505_high_6
[»] chr8 (1 HSPs)
chr8 (15-342)||(2319577-2319903)
[»] chr4 (2 HSPs)
chr4 (15-322)||(16989980-16990287)
chr4 (306-342)||(16989546-16989582)
[»] chr3 (3 HSPs)
chr3 (68-150)||(54712861-54712943)
chr3 (306-342)||(1259402-1259438)
chr3 (306-342)||(37242690-37242726)
[»] chr1 (1 HSPs)
chr1 (62-228)||(41664576-41664735)
[»] chr5 (2 HSPs)
chr5 (62-228)||(32972224-32972384)
chr5 (229-288)||(32972406-32972465)
[»] chr7 (1 HSPs)
chr7 (306-342)||(31234854-31234890)
[»] chr6 (1 HSPs)
chr6 (306-342)||(18246655-18246691)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 2319903 - 2319577
Alignment:
Q  15 agatttacacatcatataaatcgaaacaagtaataattaaaattaagtttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccc 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  2319903 agatttacacatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtttatggtgaaatttagagaattgtaatggaacacagtcc- 2319805  T
Q  115 tcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatgcttgtagacttcgatttttatgttcttaatgaaaattgcagattcc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  2319804 tcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatgcttgtagacttcaatttttattttcttcatgaaaattgcagattcc 2319705  T
Q  215 aatttttcttataattgagtttgtgtatggcagtgtgttccacatagaagcagctgcaatgttaaattgatttcacaagaggagaagatcgattcactat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2319704 aatttttcttataattgagtttgtgtatggcagtgtgttccacatagaagcagctgcaatgttaaattgatttcacaagaggagaagatcgattcactat 2319605  T
Q  315 tttagtttgtttactctaattttcaaac 342  Q
    ||||||||||||||||||||||||||||    
T  2319604 tttagtttgtttactctaattttcaaac 2319577  T

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Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 16990287 - 16989980
Alignment:
Q  15 agatttacacatcatataaatcgaaacaagtaataattaaaattaagtttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccc 114  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16990287 agatttacccatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtttatggtgaaatttagagaattgtaatggaacacagtccc 16990188  T
Q  115 tcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatgcttgtagacttcgatttttatgttcttaatgaaaattgcagattcc 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||||    
T  16990187 tcacaaagcttcaaatactctttgtttttcaatcaaattgtgggtggctagatgcttgtagacttcaatttttattttcttcatgaaattttcagattcc 16990088  T
Q  215 aatttttcttataattgagtttgtgtatggcagtgtgttccacatagaagcagctgcaatgttaaattgatttcacaagaggagaagatcgattcactat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990087 aatttttcttataattgagtttgtgtatggcagtgtgttccacatagaagcagctgcaatgttaaattgatttcacaagaggagaagatcgattcactat 16989988  T
Q  315 tttagttt 322  Q
    ||||||||    
T  16989987 tttagttt 16989980  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 16989582 - 16989546
Alignment:
Q  306 attcactattttagtttgtttactctaattttcaaac 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  16989582 attcactattttagtttgtttactctaattttcaaac 16989546  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 54712943 - 54712861
Alignment:
Q  68 ttttggttgatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaa 150  Q
    |||||||| |||||||||||||||||||||||||| | |||| ||||||| ||||| |||| || ||||| ||||||||||||    
T  54712943 ttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcataaagcctcaaatattctttatttttcaatcaa 54712861  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 1259402 - 1259438
Alignment:
Q  306 attcactattttagtttgtttactctaattttcaaac 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  1259402 attcactattttagtttgtttactctaattttcaaac 1259438  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 37242690 - 37242726
Alignment:
Q  306 attcactattttagtttgtttactctaattttcaaac 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  37242690 attcactattttagtttgtttactctaattttcaaac 37242726  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 41664735 - 41664576
Alignment:
Q  62 tttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtgg 161  Q
    ||||| |||||||| |||||||||||||||||||||||||| | |||| ||||||  ||||| |||| |  ||||| ||||||||||||| | || ||||    
T  41664735 ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcttaaagcctcaaattttctttatttttcaatcaaactatgcgtgg 41664636  T
Q  162 ctagatgcttgtagacttcgatttttatgttcttaatgaaaattgcagattccaatttttcttataa 228  Q
     || ||| ||||||| ||  |||||       || ||||||| |||| |||||||||||||||||||    
T  41664635 ttaaatgattgtagatttgaatttt-------tttatgaaaactgcatattccaatttttcttataa 41664576  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 32972224 - 32972384
Alignment:
Q  62 tttttgttttggttgatggtgaaatttagagaattgtaatggaacacagtccctca-caaagcttcaagtactctttgtttttcaatcaaattgtgggtg 160  Q
    ||||| |||||||| |||||||||||||||||||||||||| | |||| |||||||  ||||| |||| |  | ||| ||||||||||||| | || |||    
T  32972224 ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcataaaagcctcaaattttatttatttttcaatcaaactatgcgtg 32972323  T
Q  161 gctagatgcttgtagacttcgatttttatgttcttaatgaaaattgcagattccaatttttcttataa 228  Q
    | || ||| ||||||| ||  |||||       || ||||||| |||||||| |||||||||||||||    
T  32972324 gttaaatgattgtagatttgaatttt-------tttatgaaaactgcagatttcaatttttcttataa 32972384  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 32972406 - 32972465
Alignment:
Q  229 ttgagtttgtgtatggcagtgtgttccacatagaagcagctgcaatgttaaattgatttc 288  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||| ||  |||||||||    
T  32972406 ttgagtttgtgtatgtcagtgtgttccccatagaagcaactgcaatatttcattgatttc 32972465  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 31234854 - 31234890
Alignment:
Q  306 attcactattttagtttgtttactctaattttcaaac 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  31234854 attcactattttagtttgtttactctaattttcaaac 31234890  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 18246655 - 18246691
Alignment:
Q  306 attcactattttagtttgtttactctaattttcaaac 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  18246655 attcactattttagtttgtttactctaattttcaaac 18246691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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