View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_high_9 (Length: 250)
Name: NF4505_high_9
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 44846292 - 44846528
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44846292 |
gagatgatggttggaccccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctctttg |
44846391 |
T |
|
| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttcttnnnnnnnnnnnnnnttataatttcattaaccattatctct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44846392 |
atacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttcttaaaaaaaaaattatttataatttcattaaccattatctct |
44846491 |
T |
|
| Q |
214 |
aggacatctataaaatttagtaaaacttatttttatt |
250 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
44846492 |
gggatatctataaaatttagtaaaacttatttttatt |
44846528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 21727 - 21570
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| || | |
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| T |
21727 |
gagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgta |
21629 |
T |
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| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
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||||||||| ||||| ||| |||||||| ||||||||||||||| |||||| ||||||| |
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| T |
21628 |
gtacaacttgtactagagag-tttcatcgccattgttaatatatcacattttgatttctt |
21570 |
T |
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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 40483788 - 40483631
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| || | |
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| T |
40483788 |
gagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgta |
40483690 |
T |
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| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
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||||||||| ||||| ||| |||||||| ||||||||||||||| |||||| ||||||| |
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| T |
40483689 |
gtacaacttgtactagagag-tttcatcgccattgttaatatatcacattttgatttctt |
40483631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 42272564 - 42272406
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
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||||||||||| ||| |||||| | |||||||||||||| ||| ||| | || ||||| |||||||||| |||| |||||||||||| ||| || |||| |
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| T |
42272564 |
gagatggtggtcggaccccttagtatgtttgggtcttgattgatctt-tcattttgtatatactttgtatgacgctttgtcttttggggtggtctctttg |
42272466 |
T |
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| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
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||||| ||| ||||| |||| | ||| || |||||||||||||| |||||| ||||||| |
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| T |
42272465 |
gtacatcttgtactagggagctctcaccgccattgttaatatatttcattttgatttctt |
42272406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 24976069 - 24976140
Alignment:
| Q |
103 |
tggcctatttggtacaacttatactatggagtttt-catcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
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|||| ||||||||||| ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||| |
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| T |
24976069 |
tggcttatttggtacaccttgtactaaggagtattacgtcgccgttgttaatatatcccattttaatttctt |
24976140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 4939367 - 4939212
Alignment:
| Q |
17 |
atggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttggta |
116 |
Q |
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|||||| | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||| | ||| ||||||||||||||| | | || |
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| T |
4939367 |
atggtgttcggattccttattgtgtttgggtcttgactgacctttttatcttatacatactttgtaagacagcttg-cttttgggatggcctctctaata |
4939269 |
T |
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| Q |
117 |
caacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
| |
|
|||||| ||||| |||| | |||||| ||||||||||||||| |||||| ||||||| |
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| T |
4939268 |
caacttgtactagggagctctcatcgccattgttaatatatctcattttgatttctt |
4939212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 36379679 - 36379585
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcct |
108 |
Q |
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||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
36379679 |
gagatggtggtcggatctcttattgtatttgggtcttgactgatctttttatcttgtgtatactttgtaagacggtttgtcttttggggtggcct |
36379585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 19015187 - 19015343
Alignment:
| Q |
15 |
agatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttgg |
114 |
Q |
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|
|||||||||| | | |||||| | ||||||||||| |||||| ||| |||| |||| |||||||||||||||| ||||||||||| ||| || |||| |
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| T |
19015187 |
agatggtggtcgaaccccttaatatgtttgggtctagactgatctttttat--tgtatatactttgtaagacggtttgtcttttggagtggtctctttga |
19015284 |
T |
|
| Q |
115 |
tacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
| |
|
|||| ||| ||||| |||| | ||| || |||| |||||||||| |||||| ||||||| |
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| T |
19015285 |
tacatcttgtactagggagctctcaccgccattattaatatatctcattttgatttctt |
19015343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 28357427 - 28357363
Alignment:
| Q |
110 |
tttggtacaacttatactatggagtttt-catcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
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||||||||| ||| |||| |||||||| || || | |||||||||||||||||||||||||||| |
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| T |
28357427 |
tttggtacaccttgtacttaggagttttacaccgccgttgttaatatatcccattttaatttctt |
28357363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 8384433 - 8384275
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| |||||||||||| ||| |||||||||| ||||||||||||| || |||||||| || || || |||| |
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| T |
8384433 |
gagatggtggtcgga-cccttattatgtttaggtcttgactgatctttttatcttgtatatactttgtaagatggtttgtctttaagggtgatctctttg |
8384335 |
T |
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| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
| |
|
||||| ||||||||| |||| | ||||| |||||||||||||||||||||| ||||||| |
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| T |
8384334 |
gtacatcttatactagggagctcgcatcgccattgttaatatatcccattttgatttctt |
8384275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 41593407 - 41593446
Alignment:
| Q |
134 |
ttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |
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| T |
41593407 |
ttttcatcgtcgttgttaatatatcctattttaatttctt |
41593446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 64264 - 64422
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
| |
|
|||||| |||| |||||| ||| | |||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||| | ||| || |||| |
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| T |
64264 |
gagatgatggtcggatcctttactttgtttgggtcttgactgatgttgt-atcttgtaaatactttgtaagacggtttgtcttttgaggtggtctctttg |
64362 |
T |
|
| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
173 |
Q |
| |
|
||||| ||| ||||| ||| || |||||| |||| |||||||| ||||||| ||||||| |
|
|
| T |
64363 |
gtacatcttgtactagggaattctcatcgccattattaatataatccattttgatttctt |
64422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 50969 - 51050
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtctt |
96 |
Q |
| |
|
||||||||||| |||||| ||| || ||||||||||||||| || | ||||||||||||||||||||||||| ||||||| |
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| T |
50969 |
gagatggtggtcggatcctttacattgcttgggtcttgactgatgttgt-atcttgtaaatactttgtaagacggtttgtctt |
51050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 9492304 - 9492154
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
| |
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||||||||||| ||| || ||| | |||||| ||||||||| | || ||||||||| |||||||||||||||| |||||||||||| ||| || |||| |
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| T |
9492304 |
gagatggtggtcggaccctttagtttgtttgagtcttgactaatgtt-gtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttg |
9492206 |
T |
|
| Q |
114 |
gtacaacttatactatggagttttcatcgtcattgttaatatatcccatttt |
165 |
Q |
| |
|
||||| ||| ||||| |||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
9492205 |
gtacatcttgtactagggagttctcttcgccattcttaatatatcccatttt |
9492154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 15792788 - 15792679
Alignment:
| Q |
14 |
gagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttg |
113 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||||||| | ||| || ||||| |||| |||||||||| |||||||||||| ||| || |||| |
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|
| T |
15792788 |
gagatggtggttggaccccttagtttgtttgggtcttgactaatcttttt---ttgtatatacactgtaagacgg-ttgtcttttggggtggtctctttg |
15792693 |
T |
|
| Q |
114 |
gtacaacttatact |
127 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
15792692 |
gtacatcttgtact |
15792679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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