View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4505_low_10 (Length: 280)

Name: NF4505_low_10
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4505_low_10
NF4505_low_10
[»] chr3 (29 HSPs)
chr3 (144-265)||(44694869-44694990)
chr3 (40-118)||(44694985-44695063)
chr3 (1-67)||(29917030-29917097)
chr3 (1-67)||(29966183-29966250)
chr3 (5-62)||(35299883-35299941)
chr3 (1-65)||(16969573-16969637)
chr3 (1-69)||(46623903-46623971)
chr3 (7-65)||(11630761-11630820)
chr3 (5-67)||(19150329-19150392)
chr3 (1-66)||(108430-108495)
chr3 (1-62)||(32187144-32187206)
chr3 (1-67)||(36671021-36671087)
chr3 (1-66)||(48405409-48405475)
chr3 (1-66)||(48945846-48945911)
chr3 (1-65)||(9027873-9027937)
chr3 (1-65)||(14957836-14957900)
chr3 (1-66)||(16479631-16479696)
chr3 (1-65)||(29573362-29573427)
chr3 (1-46)||(44463376-44463421)
chr3 (1-65)||(51464279-51464343)
chr3 (7-64)||(55151729-55151786)
chr3 (1-68)||(3958025-3958092)
chr3 (1-65)||(6178432-6178496)
chr3 (1-65)||(7668194-7668258)
chr3 (1-68)||(30796621-30796688)
chr3 (1-68)||(32981128-32981195)
chr3 (28-67)||(34021496-34021536)
chr3 (1-65)||(37302546-37302610)
chr3 (3-66)||(47773984-47774047)
[»] chr7 (20 HSPs)
chr7 (7-70)||(12102722-12102785)
chr7 (1-67)||(27164844-27164910)
chr7 (7-65)||(37149502-37149561)
chr7 (1-67)||(13152591-13152657)
chr7 (1-66)||(35192280-35192346)
chr7 (1-66)||(31398123-31398188)
chr7 (1-68)||(19426577-19426644)
chr7 (7-65)||(29162292-29162350)
chr7 (1-64)||(46578142-46578205)
chr7 (1-66)||(28824502-28824567)
chr7 (1-66)||(37352109-37352175)
chr7 (1-66)||(38344759-38344825)
chr7 (9-66)||(15325652-15325709)
chr7 (1-57)||(29034109-29034165)
chr7 (1-65)||(31982057-31982121)
chr7 (1-65)||(44175545-44175609)
chr7 (5-65)||(49069249-49069310)
chr7 (1-64)||(23910257-23910321)
chr7 (2-66)||(32933547-32933610)
chr7 (2-66)||(44895580-44895644)
[»] chr4 (26 HSPs)
chr4 (1-66)||(38864742-38864808)
chr4 (1-66)||(55510859-55510923)
chr4 (1-64)||(336814-336877)
chr4 (1-62)||(12694435-12694496)
chr4 (7-69)||(45082977-45083039)
chr4 (1-65)||(2738274-2738339)
chr4 (1-65)||(3078914-3078979)
chr4 (1-62)||(38376498-38376559)
chr4 (1-66)||(50890080-50890145)
chr4 (1-69)||(29175223-29175291)
chr4 (7-66)||(3286817-3286876)
chr4 (1-66)||(3222988-3223053)
chr4 (1-66)||(17475321-17475387)
chr4 (7-68)||(31804342-31804403)
chr4 (29-67)||(41347490-41347528)
chr4 (1-57)||(11068698-11068752)
chr4 (7-67)||(47998592-47998652)
chr4 (1-66)||(55609172-55609237)
chr4 (27-66)||(9162065-9162105)
chr4 (1-68)||(10994159-10994226)
chr4 (1-68)||(17363227-17363294)
chr4 (7-66)||(31221412-31221471)
chr4 (7-71)||(35694606-35694669)
chr4 (1-72)||(37514138-37514210)
chr4 (1-68)||(47965736-47965804)
chr4 (1-68)||(50721751-50721819)
[»] chr2 (16 HSPs)
chr2 (7-64)||(17826052-17826109)
chr2 (1-68)||(41042251-41042318)
chr2 (7-71)||(1573699-1573762)
chr2 (7-66)||(7648391-7648450)
chr2 (1-67)||(34262025-34262091)
chr2 (1-66)||(27307238-27307303)
chr2 (1-66)||(42251927-42251992)
chr2 (1-65)||(3196094-3196158)
chr2 (5-62)||(9051933-9051990)
chr2 (9-66)||(27490745-27490802)
chr2 (1-65)||(39744601-39744665)
chr2 (1-68)||(10687938-10688005)
chr2 (29-68)||(22353198-22353238)
chr2 (1-68)||(23880092-23880159)
chr2 (7-66)||(43658722-43658782)
chr2 (1-65)||(44287447-44287511)
[»] chr1 (21 HSPs)
chr1 (1-66)||(31088180-31088245)
chr1 (7-72)||(45333563-45333628)
chr1 (1-65)||(45740551-45740615)
chr1 (6-66)||(51703464-51703524)
chr1 (1-66)||(33100807-33100872)
chr1 (1-73)||(34941927-34941999)
chr1 (1-65)||(49931553-49931618)
chr1 (1-64)||(3558847-3558911)
chr1 (1-65)||(23645411-23645475)
chr1 (1-68)||(51168775-51168842)
chr1 (1-67)||(30735300-30735366)
chr1 (1-66)||(31493884-31493949)
chr1 (1-65)||(50528064-50528128)
chr1 (7-66)||(586898-586957)
chr1 (27-66)||(1690445-1690485)
chr1 (7-66)||(11947794-11947854)
chr1 (2-65)||(20288347-20288411)
chr1 (1-68)||(25130700-25130767)
chr1 (1-68)||(32926256-32926324)
chr1 (1-67)||(49425736-49425801)
chr1 (7-66)||(50226892-50226951)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-65)||(366294-366358)
[»] chr8 (17 HSPs)
chr8 (11-64)||(39719265-39719318)
chr8 (28-66)||(40670955-40670993)
chr8 (1-65)||(3270885-3270950)
chr8 (28-64)||(17492530-17492566)
chr8 (3-66)||(34810650-34810713)
chr8 (1-67)||(42443102-42443168)
chr8 (3-66)||(36593795-36593859)
chr8 (1-66)||(45101395-45101460)
chr8 (1-65)||(295545-295610)
chr8 (1-65)||(10644808-10644873)
chr8 (28-68)||(36064027-36064068)
chr8 (1-66)||(37449432-37449497)
chr8 (1-65)||(4054293-4054357)
chr8 (3-66)||(12655921-12655985)
chr8 (7-66)||(22852852-22852911)
chr8 (1-65)||(31249531-31249595)
chr8 (1-65)||(32501203-32501267)
[»] chr6 (11 HSPs)
chr6 (1-66)||(8505780-8505846)
chr6 (1-65)||(11635541-11635606)
chr6 (7-65)||(18065102-18065161)
chr6 (1-67)||(552791-552857)
chr6 (1-66)||(11017382-11017447)
chr6 (1-66)||(11785354-11785419)
chr6 (1-66)||(15722510-15722575)
chr6 (1-66)||(17417242-17417307)
chr6 (7-67)||(9954546-9954606)
chr6 (1-62)||(16533267-16533327)
chr6 (2-62)||(3853315-3853375)
[»] chr5 (20 HSPs)
chr5 (1-65)||(12718387-12718451)
chr5 (1-66)||(38493624-38493689)
chr5 (1-65)||(33243746-33243810)
chr5 (7-65)||(3109599-3109658)
chr5 (1-71)||(8787163-8787233)
chr5 (1-67)||(18695316-18695383)
chr5 (1-66)||(11148510-11148576)
chr5 (1-66)||(12401191-12401256)
chr5 (1-66)||(19376139-19376204)
chr5 (8-66)||(26791258-26791316)
chr5 (1-66)||(1079959-1080024)
chr5 (1-66)||(1274357-1274422)
chr5 (1-65)||(4719650-4719715)
chr5 (1-69)||(8920074-8920143)
chr5 (1-65)||(12779613-12779677)
chr5 (1-65)||(15639385-15639449)
chr5 (1-65)||(34381012-34381076)
chr5 (1-65)||(40223792-40223856)
chr5 (2-66)||(18660758-18660822)
chr5 (2-65)||(39595272-39595335)
[»] scaffold0504 (1 HSPs)
scaffold0504 (1-68)||(10742-10809)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 44694990 - 44694869
Alignment:
Q  144 cttattactacatctatcccatcaatctctctatttctatcttccaagcagcggttgggggtgtattacgggtttatattgatcactttcctcttcaatc 243  Q
    ||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44694990 cttattattacatctatctcatcactctctctgtttctatcttccaagcagcggttgggggtgtattatgggtttatattgatcactttcctcttcaatc 44694891  T
Q  244 tttttgtttctagtattttttg 265  Q
    ||||||||||||||||||||||    
T  44694890 tttttgtttctagtattttttg 44694869  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 44695063 - 44694985
Alignment:
Q  40 aaatgattgtacaaatattatttctctatatttaaacatctccaacatttaaatgtttactatttattattatcttatt 118  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  44695063 aaataattgtacaaatatcatttctctatatttaaacatctccaacacttaaatatttactatttattattatcttatt 44694985  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29917030 - 29917097
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| ||| ||||||||| |  ||||||||||||||||||||||||||||    
T  29917030 tgtgagtatgagagagaaagttgtcacaaaagttgttaggaaatgattgtacaaatattatttctcta 29917097  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29966183 - 29966250
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| ||| ||||||||| |  ||||||||||||||||||||||||||||    
T  29966183 tgtgagtatgagagagaaagttgtcacaaaagttgttaggaaatgattgtacaaatattatttctcta 29966250  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 35299883 - 35299941
Alignment:
Q  5 aatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattattt 62  Q
    ||||||| |||||||||||||| |||||||||| | |||||||||||||||||| ||||    
T  35299883 aatatgaaagaaaaagttatcataaaagttgtcaaaaaatgattgtacaaatatcattt 35299941  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16969573 - 16969637
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||||||||||||||| ||||| ||||  |||||| |||||||    
T  16969573 tgtgagtatgagagagaaagttgtcaaaaaagttgtcaaaaatggttgttaaaatatcatttctc 16969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46623971 - 46623903
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctata 69  Q
    ||||||||| ||||| |||||| ||| ||||||||| | ||||| |||| ||||||| |||||||||||    
T  46623971 tgtgaatatcagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctctata 46623903  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 11630761 - 11630820
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttctc 65  Q
    ||||| |||||||||||||| |||||||||| | |||| ||||| |||||||||||||||    
T  11630761 tatgaaagaaaaagttatcacaaaagttgtcaagaaataattgttcaaatattatttctc 11630820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 19150329 - 19150392
Alignment:
Q  5 aatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctcta 67  Q
    ||||||||||| |||||| ||| ||||||||| | ||| ||||||||||||||| |||||||||    
T  19150329 aatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctcta 19150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 108495 - 108430
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| |||||||| |||||||||| || |||||||||||| ||||||||    
T  108495 tgtgagtatgagagagaaagttgtcaaaaaa-ttgtcacaaagtggttgtacaaatatcatttctct 108430  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32187206 - 32187144
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattattt 62  Q
    ||||||||||||||| || ||| ||| |||||||||||| ||||| |||||||||||| ||||    
T  32187206 tgtgaatatgagagagaaggttgtcataaaagttgtcacaaaatggttgtacaaatatcattt 32187144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36671021 - 36671087
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctcta 67  Q
    ||||| |||||||||||||||| ||| |||| |||| | ||||| |||| ||||||| |||||||||    
T  36671021 tgtgagtatgagagaaaaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctcta 36671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48405475 - 48405409
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| | | |||||||||||| ||||| |||||||||||| ||||||||    
T  48405475 tgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctct 48405409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48945911 - 48945846
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||||||||||||||||| || || || ||||||||||||| || |||||||||||| ||||||||    
T  48945911 tgtgaatatgagagaaaaaattgtc-aagaagttgtcacaaagtggttgtacaaatatcatttctct 48945846  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9027937 - 9027873
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||||||| ||||||| ||||||| || |||||||||||| |||||||    
T  9027937 tgtgagtatgagagagaaagttatca-aaaagttatcacaaagtggttgtacaaatatcatttctc 9027873  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14957900 - 14957836
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||||||||||||||||| || |  |||||||||||||||| || |||||||||||| |||||||    
T  14957900 tgtgaatatgagagaaaaaattgt-taaaaagttgtcacaaagtggttgtacaaatatcatttctc 14957836  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16479696 - 16479631
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||| |||||||||   ||||| |||||||||||| ||||||||    
T  16479696 tgtgagtatgagagagaaagttgtcacaaaagttgtacaaaatggttgtacaaatatcatttctct 16479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29573362 - 29573427
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||| ||||||||| ||||| || |||||||||||| |||||||    
T  29573362 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 29573427  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44463421 - 44463376
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgat 46  Q
    ||||| ||||||||| |||||||||| ||||||||||| |||||||    
T  44463421 tgtgagtatgagagagaaagttatcacaaaagttgtcaaaaatgat 44463376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51464279 - 51464343
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| |||||| |||||||||||| || |||||||||||| |||||||    
T  51464279 tgtgagtatgagagataaagttgtcaaaa-agttgtcacaaagtggttgtacaaatatcatttctc 51464343  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 55151729 - 55151786
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttct 64  Q
    ||||||||| ||| |||||| ||||||||||| ||||| |||| ||||||| ||||||    
T  55151729 tatgagagataaaattatcataaaagttgtcaaaaatggttgttcaaatatcatttct 55151786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3958025 - 3958092
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| ||||||  || | |||||||||||||| |||||||||||||| ||||||||||    
T  3958025 tgtgagtatgagagagaaagttg-cacagaagttgtcacaaattgattgtacaaatatcatttctctat 3958092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6178432 - 6178496
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| ||| || ||| ||||||||||| ||||  |||||||||||| |||||||    
T  6178432 tgtgagtatgagagagaaaattgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctc 6178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7668194 - 7668258
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||| ||||| ||| || ||||||||||||| | |||||||||| ||||||| |||||||    
T  7668194 tgtgagtataagagagaaaattgtcaaaaaagttgtaaaaaatgattgttcaaatatcatttctc 7668258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30796621 - 30796688
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| |||||||||||||||| || || ||||||||||||| || |||| ||||||| ||||||||||    
T  30796621 tgtgagtatgagagaaaaagttgtc-aagaagttgtcacaaagtggttgtgcaaatatcatttctctat 30796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32981128 - 32981195
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| || |||| |||||||| ||||| |||||||||||| ||||||||||    
T  32981128 tgtgagtatgagagagaaagttgtctaaaa-gttgtcactaaatggttgtacaaatataatttctctat 32981195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 34021496 - 34021536
Alignment:
Q  28 aaaagttgtcacaaat-gattgtacaaatattatttctcta 67  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  34021496 aaaagttgtcacaaattgattgtacaaatatcatttctcta 34021536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37302610 - 37302546
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| ||| ||||||||| | ||||| ||||  |||||| |||||||    
T  37302610 tgtgaatatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttaaaatatcatttctc 37302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 47773984 - 47774047
Alignment:
Q  3 tgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctct 66  Q
    ||||||||||||| |||||||||  ||||||| |||| |||||| ||||||||||| ||||||||    
T  47773984 tgaatatgagagataaagttatc-taaaagttatcacaaaatgaatgtacaaatatcatttctct 47774047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 12102722 - 12102785
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctatat 70  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  12102722 tatgagagagaaagttatcaaaaaaattgtcacaaatgattgaacaaatatcatttctctatat 12102785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27164844 - 27164910
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||||| | |||||||||||||||| |||||||||||||| |||||||||    
T  27164844 tgtgagtatgagagagaaagttat-acaaaagttgtcacaaattgattgtacaaatatcatttctcta 27164910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 37149502 - 37149561
Alignment:
Q  7 tatgagagaaaaagttatc-aaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||||||| |||||| || ||||||||||||||||||| |||||||||||| |||||||    
T  37149502 tatgagagagaaagttctctaaaaaagttgtcacaaatggttgtacaaatatcatttctc 37149561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13152657 - 13152591
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| ||| ||||||||||| ||||| |||| ||||||| |||||||||    
T  13152657 tgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctcta 13152591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35192280 - 35192346
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||||||| |||||| |||||||||||| |||||  ||| ||||||||||||||||    
T  35192280 tgtgagtatgagagaaaaaattatcataaaagttgtcacaaaatggatgttcaaatattatttctct 35192346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31398188 - 31398123
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||||||| |||||||||   ||||| |||||||||||| ||||||||    
T  31398188 tgtgagtatgagagagaaagttatcacaaaagttgtataaaatggttgtacaaatatcatttctct 31398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19426644 - 19426577
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||||||||    
T  19426644 tgtgagtatgagagagaaagttgtcaaaaa-gttgtcacaaaatggttgtacaaatatcatttctctat 19426577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 29162292 - 29162350
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctc 65  Q
    ||||||||| |||||||| | |||||||||||||||| |||||||||||||| |||||||    
T  29162292 tatgagagagaaagttat-acaaaagttgtcacaaattgattgtacaaatatcatttctc 29162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46578142 - 46578205
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttct 64  Q
    ||||||||||||||| ||| || | | ||||||||||| ||||||||||||| |||| ||||||    
T  46578142 tgtgaatatgagagataaaattgttacaaaagttgtcaaaaatgattgtacatatatcatttct 46578205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28824567 - 28824502
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||||||||||||| |||||| || |||||||||||| ||| || |||||||||||| ||||||||    
T  28824567 tgtgaatatgagagagaaagttgtc-aaaaagttgtcagaaagtggttgtacaaatatcatttctct 28824502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37352175 - 37352109
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||||||||| |||||| |||| ||||| | ||||| |||| ||||||| ||||||||    
T  37352175 tgtgaatatgagagaaaaaattatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctct 37352109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38344825 - 38344759
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||||||||||||| ||  |||||| ||||||||||| ||| ||||||| ||||||| ||||||||    
T  38344825 tgtgaatatgagagacaagattatcacaaaagttgtcaaaaattgattgttcaaatataatttctct 38344759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 15325652 - 15325709
Alignment:
Q  9 tgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||| |||||| ||| ||||||||||| |||||||||| ||||||| || |||||    
T  15325652 tgagagagaaagttgtcacaaaagttgtcaaaaatgattgttcaaatatcatatctct 15325709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29034165 - 29034109
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatat 57  Q
    ||||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||    
T  29034165 tgtgagtatgagagagaaaattatcaaaaaa-ttgtcacaaaatgattgtacaaatat 29034109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31982121 - 31982057
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| |||||||| |||||||||||||| | |||||||||| || |||||||||||| |||||||    
T  31982121 tgtgagtatgagagcaaaagttatcaaaaga-ttgtcacaaagtggttgtacaaatatcatttctc 31982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 44175609 - 44175545
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| | | ||||||| ||||||| |||||||||||||||||||||||    
T  44175609 tgtgagtatgagagagaaagttgt-acaaaagttatcacaaaatgattgtacaaatattatttctc 44175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 49069310 - 49069249
Alignment:
Q  5 aatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||||||||| ||| |||||| ||||||||||| ||| || |||||||||||| |||||||    
T  49069310 aatatgagagagaaaattatcacaaaagttgtcaaaaagtggttgtacaaatatcatttctc 49069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23910257 - 23910321
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttct 64  Q
    ||||||||||||||||||  || ||| |||||||||| | ||||| |||||||||||| ||||||    
T  23910257 tgtgaatatgagagaaaatattgtcacaaaagttgtcaaaaaatggttgtacaaatatcatttct 23910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 32933610 - 32933547
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||| ||||||||| ||| || |||||||  ||||||||||| ||||||||||||| ||||||||    
T  32933610 gtgagtatgagagagaaaattgtcaaaaat-ttgtcacaaataattgtacaaatatcatttctct 32933547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 44895580 - 44895644
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||||||||||| | |||||| ||| ||||||||| | ||||| |||| ||||||| ||||||||    
T  44895580 gtgaatatgagatagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctct 44895644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38864742 - 38864808
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||| ||||||||||||| ||||||||    
T  38864742 tgtgagtatgagagagaaagttgtcaaaaaagttgtcacaaaataattgtacaaatatcatttctct 38864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 55510923 - 55510859
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| ||||||||| ||||| |||||| |||||||||||||||||| ||||||||    
T  55510923 tgtgagtatgagagataaagttatctaaaaa-ttgtcataaatgattgtacaaatatcatttctct 55510859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 336814 - 336877
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttct 64  Q
    ||||||||||||||| |||||| ||| |||| |||||| |||| ||||||||||||| ||||||    
T  336814 tgtgaatatgagagagaaagttgtcacaaaaattgtcaaaaataattgtacaaatatcatttct 336877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12694435 - 12694496
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattattt 62  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||| ||||    
T  12694435 tgtgaatatgagagagaaagttatc-aaaaagttgtcacaaaatggttgtacaaatatcattt 12694496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 45083039 - 45082977
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctata 69  Q
    ||||||||| ||| |||||| ||||||||||| ||||| |||| ||||||| |||||||||||    
T  45083039 tatgagagagaaaattatcacaaaagttgtcaaaaatggttgttcaaatatcatttctctata 45082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2738274 - 2738339
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||||||| |||| ||||| | |||||||||| ||||||| |||||||    
T  2738274 tgtgaatatgagagagaaagttatcacaaaaattgtcaaaaaatgattgttcaaatatcatttctc 2738339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3078914 - 3078979
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||| ||||||||| ||||| ||||||||||||||| |||||||    
T  3078914 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctc 3078979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38376498 - 38376559
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattattt 62  Q
    ||||||||| |||||||||||| |||||||| |||| | |||||||||| ||||||| ||||    
T  38376498 tgtgaatattagagaaaaagttgtcaaaaaaattgtaaaaaatgattgttcaaatatcattt 38376559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50890080 - 50890145
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||| ||||||||||| ||||  |||||||||||| ||||||||    
T  50890080 tgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctct 50890145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29175291 - 29175223
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctata 69  Q
    ||||| |||||||||||||||| ||| |||| |||| | |||||||||| || |||| |||||||||||    
T  29175291 tgtgagtatgagagaaaaagttgtcacaaaaattgtaaaaaatgattgttcatatatcatttctctata 29175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 3286876 - 3286817
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||||| ||||||  |||||| ||||| ||||||| |||||||||||| ||||||||    
T  3286876 tatgagagagaaagttgacaaaaatgttgttacaaatggttgtacaaatatcatttctct 3286817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3223053 - 3222988
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| | | |||||||||||||||| |||||||||||||| ||||||||    
T  3223053 tgtgagtatgagagagaaagttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctct 3222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17475387 - 17475321
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtca-caaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||||||||||| ||| ||||||| ||| ||||||| ||||||||    
T  17475387 tgtgagtatgagagagaaagttgtcaaaaaagttatcaccaaatgaatgttcaaatatcatttctct 17475321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 31804342 - 31804403
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||||||| ||| ||||||||||| || ||||||| ||||||||||||||| ||||||||||    
T  31804342 tatgagagagaaaattatcaaaaaa-ttatcacaaagtgattgtacaaatatcatttctctat 31804403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 41347490 - 41347528
Alignment:
Q  29 aaagttgtcacaaatgattgtacaaatattatttctcta 67  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  41347490 aaagttgtcaaaaatgattgtacaaatataatttctcta 41347528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11068752 - 11068698
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatat 57  Q
    |||||||||||||||||  ||| ||||||||||||| | |||||||||| |||||||    
T  11068752 tgtgaatatgagagaaa--gttgtcaaaaaagttgtaaaaaatgattgttcaaatat 11068698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 47998652 - 47998592
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctcta 67  Q
    |||||||||||||||| ||||||| ||||| ||||| || |||||||||||| |||||||||    
T  47998652 tatgagagaaaaagttgtcaaaaa-gttgttacaaaatggttgtacaaatatcatttctcta 47998592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 55609172 - 55609237
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||| |||||||||   ||||| |||||||||||| ||||||||    
T  55609172 tgtgagtatgagagagaaagttgtcacaaaagttgtacaaaatggttgtacaaatatcatttctct 55609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 9162105 - 9162065
Alignment:
Q  27 aaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  9162105 aaaaagttgtcacaaaatgattgtacaaatatcatttctct 9162065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10994159 - 10994226
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| |||||| | |||||||||| || |||||||||||| ||||||||||    
T  10994159 tgtgagtatgagagataaagttgtcaaaaga-ttgtcacaaaatggttgtacaaatatcatttctctat 10994226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17363294 - 17363227
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| ||||||| ||||| | ||| ||||||||||||||| ||||||||||    
T  17363294 tgtgagtatgagagagaaagttgtcaaaaa-gttgtaataaagtgattgtacaaatatcatttctctat 17363227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 31221471 - 31221412
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||||||| |||||| | | |||||||||||||||| |||||||||||||| ||||||||    
T  31221471 tatgagagagaaagttgt-ataaaagttgtcacaaattgattgtacaaatatcatttctct 31221412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 35694606 - 35694669
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctatatt 71  Q
    ||||||||||||| |||||||||| ||||| | |||  ||||||||||||| |||||||| ||||    
T  35694606 tatgagagaaaaaattatcaaaaa-gttgttaaaaaatattgtacaaatatcatttctctttatt 35694669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37514138 - 37514210
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctatattt 72  Q
    ||||| ||||||||| |||||| ||| ||||||||| ||||| ||  ||||||||||| |||||||| |||||    
T  37514138 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggatgtacaaatatcatttctctttattt 37514210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47965804 - 47965736
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctctat 68  Q
    ||||| |||||||||||||||| |   ||||||||| || |||||| ||| ||||||||||||||||||    
T  47965804 tgtgagtatgagagaaaaagttgttgcaaaagttgtaactaaatgaatgttcaaatattatttctctat 47965736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 50721751 - 50721819
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| ||||| ||| |||||||||| ||||||||||| ||| || |||| ||||||| ||||||||||    
T  50721751 tgtgagtatgaaagagaaagttatcacaaaagttgtcaaaaattggttgttcaaatatcatttctctat 50721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 17826109 - 17826052
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttct 64  Q
    ||||||||| |||||||||  ||||||||||||||||| |||||||||||| ||||||    
T  17826109 tatgagagagaaagttatcctaaaagttgtcacaaatggttgtacaaatatcatttct 17826052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41042318 - 41042251
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctat 68  Q
    ||||| |||||||||||||||| ||| ||||||||| | ||||| |||| ||||||| ||||||||||    
T  41042318 tgtgagtatgagagaaaaagttgtcacaaaagttgttaaaaatggttgttcaaatatcatttctctat 41042251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 1573762 - 1573699
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctatatt 71  Q
    ||||||||| |||||| || ||||| |||||| ||| |||||||||||||| |||||||||||||    
T  1573762 tatgagagagaaagttgtctaaaaa-ttgtcaaaaaagattgtacaaatatcatttctctatatt 1573699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 7648450 - 7648391
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||||||||||||||| ||| |||| ||||||||||||  ||| ||||||| ||||||||    
T  7648450 tatgagagaaaaagttgtcacaaaaattgtcacaaatggatgttcaaatatcatttctct 7648391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34262025 - 34262091
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtca-caaatgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||||||||||||| |||| ||||| |  ||||| ||||||||||||||||||||||    
T  34262025 tgtgagtatgagagaaaaagttatc-aaaaggttgtaataaaatggttgtacaaatattatttctcta 34262091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27307238 - 27307303
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| | | |||||||||||||||| |||||||||||||| ||||||||    
T  27307238 tgtgagtatgagagagaaagttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctct 27307303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42251927 - 42251992
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgt-cacaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||||| ||||||||| |||||||||| |  || ||||||||||||||| ||||||||    
T  42251927 tgtgaatatgagagagaaagttatc-aaaaagttgtactaaagtgattgtacaaatatcatttctct 42251992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3196094 - 3196158
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||    
T  3196094 tgtgagtatgagagagaaagttgt-acaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 9051990 - 9051933
Alignment:
Q  5 aatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattattt 62  Q
    ||||||| ||||||| || ||| ||||||||||| |||| ||||||||||||| ||||    
T  9051990 aatatgaaagaaaaaattgtcacaaaagttgtcaaaaataattgtacaaatatcattt 9051933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 27490745 - 27490802
Alignment:
Q  9 tgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||| |||||| ||| ||||||||||| ||||| |||| ||||||| ||||||||    
T  27490745 tgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctct 27490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39744601 - 39744665
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| | ||||||||||| | |||| |||||||||||||| |||||||    
T  39744601 tgtgaatatgagagagaaagttgt-aaaaaagttgttagaaattgattgtacaaatatcatttctc 39744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10688005 - 10687938
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| | | |||||||||||||||| | |||||||||||| ||||||||||    
T  10688005 tgtgagtatgagagagaaagttgt-ataaaagttgtcacaaattgtttgtacaaatatcatttctctat 10687938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 22353198 - 22353238
Alignment:
Q  29 aaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  22353198 aaagttgtcacaaaatgattgtacaaatatcatttctctat 22353238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23880159 - 23880092
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||||||| ||||||||| | ||| || |||||||||||| ||||||||||    
T  23880159 tgtgagtatgagagagaaagttatca-aaaagttgtgagaaagtggttgtacaaatatcatttctctat 23880092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 43658722 - 43658782
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctct 66  Q
    ||||||||||||  |||||| ||||||||| |  |||||||||||||||||| ||||||||    
T  43658722 tatgagagaaaagattatcacaaaagttgttaggaaatgattgtacaaatatcatttctct 43658782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44287447 - 44287511
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||||||| |||||| ||||||||| | ||||  |||| ||||||| |||||||    
T  44287447 tgtgagtatgagagaaaaaattatcacaaaagttgtaaaaaatagttgttcaaatatcatttctc 44287511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31088245 - 31088180
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| |||||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||    
T  31088245 tgtgagtatgagagaaaaagttatcacaaaagttataaaaaatggttgttcaaatattatttctct 31088180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 45333628 - 45333563
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctctatattt 72  Q
    ||||||||| |||||| ||| ||||||||| | |||||||||| ||||||| ||||||||||||||    
T  45333628 tatgagagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctctatattt 45333563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45740551 - 45740615
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    |||||||||||||||||||| |||| |||||||||||||||| || |||||||||||| |||||||    
T  45740551 tgtgaatatgagagaaaaagctatc-aaaaagttgtcacaaagtggttgtacaaatatcatttctc 45740615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 51703464 - 51703524
Alignment:
Q  6 atatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||||||||| ||| || ||||||||||| ||||||||||||||| |||||| ||||||||    
T  51703464 atatgagagataaaattgtcaaaaaagttatcacaaatgattgtataaatatcatttctct 51703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33100872 - 33100807
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||||||||||||| | ||||| |||| ||||||| ||||||||    
T  33100872 tgtgagtatgagagagaaagttgtcaaaaaagttgtaaaaaatggttgttcaaatatcatttctct 33100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34941927 - 34941999
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctatattta 73  Q
    ||||| ||||||||| |||||| || ||||| |||||||||| |||| |||||||||| |||||||||||||||    
T  34941927 tgtgagtatgagagagaaagttgtctaaaaa-ttgtcacaaaatgatagtacaaatatcatttctctatattta 34941999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49931618 - 49931553
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttg-tcacaaatgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| ||| |||||||| | | |||||||||||||||||| |||||||    
T  49931618 tgtgaatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctc 49931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3558911 - 3558847
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttct 64  Q
    ||||| ||||||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||||    
T  3558911 tgtgagtatgagagagaaagttatcataaaagttgtcaaaaattgattgtataaatatcatttct 3558847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23645475 - 23645411
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||||||||||||| | ||||| |||| ||||||| |||||||    
T  23645475 tgtgagtatgagagataaagttgtcaaaaaagttgtaaaaaatggttgtccaaatatcatttctc 23645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 51168775 - 51168842
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctctat 68  Q
    |||||||||||||||||||||| ||  ||||||| |||| |||||||||||||| ||| ||||||||||    
T  51168775 tgtgaatatgagagaaaaagttgtc-taaaagttatcacaaaatgattgtacaagtatcatttctctat 51168842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30735300 - 30735366
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctcta 67  Q
    ||||| |||||||||||||||| ||| ||||||||| | ||||| |||| ||||||| |||| ||||    
T  30735300 tgtgagtatgagagaaaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttatcta 30735366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31493949 - 31493884
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| ||| |||| ||||| |||||||||||| ||| |||||||||||||||||||    
T  31493949 tgtgagtatgagagagaaaattattaaaaa-gttgtcacaaattgatcgtacaaatattatttctct 31493884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50528064 - 50528128
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctc 65  Q
    ||||| ||||||||||||| || || |||| |||||||||||| |||||||||||||| |||||||    
T  50528064 tgtgagtatgagagaaaaaattgtctaaaa-gttgtcacaaattgattgtacaaatatcatttctc 50528128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 586957 - 586898
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    |||||||||||||||| || ||||| || ||||||| ||||||||||||||| ||||||||    
T  586957 tatgagagaaaaagttgtctaaaaa-ttatcacaaagtgattgtacaaatatcatttctct 586898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 1690485 - 1690445
Alignment:
Q  27 aaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  1690485 aaaaagttgtcacaaaatggttgtacaaatattatttctct 1690445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 11947854 - 11947794
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtca-caaatgattgtacaaatattatttctct 66  Q
    ||||||||| |||||| ||| |||||||||||  ||||| |||||||||||| ||||||||    
T  11947854 tatgagagagaaagttgtcacaaaagttgtcataaaatggttgtacaaatatcatttctct 11947794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 20288347 - 20288411
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    |||| ||||||||| |||||| || |||||||||||||||| ||  ||||||||||| |||||||    
T  20288347 gtgagtatgagagagaaagttgtctaaaaagttgtcacaaattggatgtacaaatatcatttctc 20288411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25130767 - 25130700
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctctat 68  Q
    ||||| ||||||||| |||||| | | |||||||||||||||| |||||||||||||| |||| |||||    
T  25130767 tgtgagtatgagagagaaagttgt-acaaaagttgtcacaaattgattgtacaaatatcatttttctat 25130700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32926324 - 32926256
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtca-caaatgattgtacaaatattatttctctat 68  Q
    ||||| ||||||||||||| |||||| ||||||| |||  |||||||||| ||||||| ||||| ||||    
T  32926324 tgtgagtatgagagaaaaaattatcacaaaagttatcataaaatgattgttcaaatatcatttcactat 32926256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 49425801 - 49425736
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| ||||||  ||||||||||| || |||||||||||| |||||||||    
T  49425801 tgtgagtatgagagataaagttgtcaaaa--gttgtcacaaagtggttgtacaaatatcatttctcta 49425736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 50226892 - 50226951
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||||||    
T  50226892 tatgagagagaaagttgtcaaaaa-gttgtcacaaagtggttgtacaaatatcatttctct 50226951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 366358 - 366294
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| ||| ||||||||| | ||||| |||||||||||| |||||||    
T  366358 tgtgaatatgagagagaaagttgtcacaaaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 39719265 - 39719318
Alignment:
Q  11 agagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttct 64  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  39719265 agagaaaaagttatc-aaaaagttgtcacaaattgattgtacaaatatcatttct 39719318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 40670993 - 40670955
Alignment:
Q  28 aaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  40670993 aaaagttgtcacaaatggttgtacaaatattatttctct 40670955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3270885 - 3270950
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctc 65  Q
    ||||||||| ||||| |||||| ||| ||||||||| |  ||||||||||||||||||||||||||    
T  3270885 tgtgaatattagagagaaagttgtcacaaaagttgtaaggaaatgattgtacaaatattatttctc 3270950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 17492566 - 17492530
Alignment:
Q  28 aaaagttgtcacaaatgattgtacaaatattatttct 64  Q
    |||||||||||||||||||||||||||||| ||||||    
T  17492566 aaaagttgtcacaaatgattgtacaaatatcatttct 17492530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 34810650 - 34810713
Alignment:
Q  3 tgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||| |||||||||| || |||||| | ||||| |||| ||||||| ||||||||    
T  34810650 tgaatatgagagataaagttatcacaagagttgtaaaaaatggttgttcaaatatcatttctct 34810713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42443168 - 42443102
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| || |||| |||||||| |||||||||||||||||| |||||||||    
T  42443168 tgtgagtatgagagagaaagttgtctaaaa-gttgtcactaaatgattgtacaaatatcatttctcta 42443102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 36593795 - 36593859
Alignment:
Q  3 tgaatatgagagaaaaagttatcaaaaaagttgtcacaaat--gattgtacaaatattatttctct 66  Q
    ||||||||| ||||||| |||| | ||||||||||||||||  |||||||||||||| ||||||||    
T  36593795 tgaatatgatagaaaaaattat-ataaaagttgtcacaaattggattgtacaaatataatttctct 36593859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45101460 - 45101395
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| ||||||||    
T  45101460 tgtgagtatgagagagaaagttgtcaaaaa-gttgtcacaaagtggttgtacaaatatcatttctct 45101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 295610 - 295545
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| ||||||||||||||| |||| | ||| || |||||||||||| |||||||    
T  295610 tgtgagtatgagagagaaagttatcaaaaaaattgtgataaagtggttgtacaaatatcatttctc 295545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10644808 - 10644873
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||| ||||||||| ||||| || |||||||||||| |||||||    
T  10644808 tgtgattatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 10644873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 36064068 - 36064027
Alignment:
Q  28 aaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  36064068 aaaagttgtcacaaaatgattgtacaaatatcatttctctat 36064027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37449432 - 37449497
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| |||||||||||||||| ||| ||||||||| | ||||| ||||  |||||| ||||||||    
T  37449432 tgtgagtatgagagaaaaagttgtcacaaaagttgtaaaaaatggttgttgaaatatcatttctct 37449497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4054293 - 4054357
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||||||||| ||| |||||||||| | ||||||| | ||||| |||| ||||||| |||||||    
T  4054293 tgtgaatatgaaagataaagttatcacagaagttgtaaaaaatggttgttcaaatatcatttctc 4054357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 12655985 - 12655921
Alignment:
Q  3 tgaatatgagagaaaaagttatcaaaaaagttgtca-caaatgattgtacaaatattatttctct 66  Q
    |||||||||||||||||||||| | ||||||| | |  ||||| |||||||||||| ||||||||    
T  12655985 tgaatatgagagaaaaagttattacaaaagttattataaaatggttgtacaaatatcatttctct 12655921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 22852852 - 22852911
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    |||||||||||||||| || || ||||||||||||| || |||||||||||| ||||||||    
T  22852852 tatgagagaaaaagttgtc-aagaagttgtcacaaagtggttgtacaaatatcatttctct 22852911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31249531 - 31249595
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||||||| || ||| ||||||||| | ||||| |||| ||||||| |||||||    
T  31249531 tgtgagtatgagagaaaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 31249595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32501203 - 32501267
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| ||| || | ||||||||||| | |||||||||| ||||||| |||||||    
T  32501203 tgtgagtatgagagagaaaattgttaaaaaagttgtaaaaaatgattgttcaaatatcatttctc 32501267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8505780 - 8505846
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||||| |||||| ||| |||||||||| | |||||||||| ||||||| ||||||||    
T  8505780 tgtgaatatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctct 8505846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11635541 - 11635606
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtc-acaaatgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| ||| |||||||||| | |||||||||| ||||||| |||||||    
T  11635541 tgtgaatatgagagagaaagttgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctc 11635606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 18065102 - 18065161
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    |||||||||||||||| ||| ||||||||||| ||| ||||||| ||||||| |||||||    
T  18065102 tatgagagaaaaagttgtcacaaaagttgtcaaaaagtgattgttcaaatatcatttctc 18065161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 552857 - 552791
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctcta 67  Q
    ||||||||||||||| |||||| ||| | ||||||| | ||||| |||| ||||||| |||||||||    
T  552857 tgtgaatatgagagacaaagttgtcacataagttgtaaaaaatgtttgttcaaatatcatttctcta 552791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11017447 - 11017382
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| | | |||||||||||| ||| |||||||||||||||||||||||    
T  11017447 tgtgagtatgagagagaaagttgt-acaaaagttgtcacgaattgattgtacaaatattatttctct 11017382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11785419 - 11785354
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||||||||||| | |||||| |||||||| |||||||||| || |||||||||||| ||||||||    
T  11785419 tgtgaatatgagatagaaagttgtcaaaaaa-ttgtcacaaaatggttgtacaaatatcatttctct 11785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15722510 - 15722575
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| || ||| ||||||| ||||||||||| ||||||||||||||| ||||||||    
T  15722510 tgtgagtatgagagagaaggttgtcaaaaa-gttgtcacaaaatgattgtacaaatatcatttctct 15722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17417242 - 17417307
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcaca-aatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| || ||||| |||||||| ||||||||||||||||| ||||||||    
T  17417242 tgtgagtatgagagagaaagttgtccaaaaa-ttgtcacataatgattgtacaaatatcatttctct 17417307  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 9954606 - 9954546
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctcta 67  Q
    ||||||||| |||||| ||||||| |||||||||||| | |||||||||||| |||||||||    
T  9954606 tatgagagagaaagttgtcaaaaa-gttgtcacaaattggttgtacaaatatcatttctcta 9954546  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16533267 - 16533327
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattattt 62  Q
    ||||| ||||||||| |||||| || ||||| |||||||||||| |||||||||||| ||||    
T  16533267 tgtgagtatgagagataaagttgtctaaaaa-ttgtcacaaatggttgtacaaatatcattt 16533327  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 3853315 - 3853375
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattattt 62  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||| ||||  |||||| ||||    
T  3853315 gtgattatgagagagaaagttatcacaaaagttgtcaaaaatgtttgtttaaatatcattt 3853375  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12718387 - 12718451
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||||||||||||| |||||| || |||||||||||||||| || |||||||||||| |||||||    
T  12718387 tgtgaatatgagagataaagttgtc-aaaaagttgtcacaaattggttgtacaaatatcatttctc 12718451  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38493689 - 38493624
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||||||| ||||||| | | |||| ||||||||||||| ||||||||    
T  38493689 tgtgagtatgagagagaaagttatcacaaaagttattagaaattattgtacaaatatcatttctct 38493624  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33243746 - 33243810
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctc 65  Q
    ||||| |||| |||| |||||| |||||||| |||||||||||| || ||||||||| |||||||    
T  33243746 tgtgagtatgcgagagaaagttgtcaaaaaaattgtcacaaatggttatacaaatatcatttctc 33243810  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 3109599 - 3109658
Alignment:
Q  7 tatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||||||| || ||| ||| ||||||||||||||| ||||||||||||||| |||||||    
T  3109599 tatgagagagaatgttgtcacaaaagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 8787163 - 8787233
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctctatatt 71  Q
    ||||||||||||||||||| || |||||||| || |||| ||||  |||||||||||| |||||||||||||    
T  8787163 tgtgaatatgagagaaaaacttgtcaaaaaa-ttatcactaaattgttgtacaaatatcatttctctatatt 8787233  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18695383 - 18695316
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctcta 67  Q
    ||||| ||||||||| |||||| ||| ||||||||| ||||| || |||||||||||| |||||||||    
T  18695383 tgtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcta 18695316  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11148576 - 11148510
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| || ||| ||| ||||||||||| |||| |||||||||||||| ||||||||    
T  11148576 tgtgagtatgagagagaatgttgtcacaaaagttgtcaaaaattgattgtacaaatatcatttctct 11148510  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12401256 - 12401191
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaat-gattgtacaaatattatttctct 66  Q
    ||||| ||||||||| |||||| | ||||||||||| |||||| |||||||||||||| ||||||||    
T  12401256 tgtgagtatgagagagaaagttgt-aaaaaagttgttacaaattgattgtacaaatatcatttctct 12401191  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19376139 - 19376204
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctct 66  Q
    ||||| ||||||||| ||||||||| |||||||||||| ||| || |||||||||||| ||||||||    
T  19376139 tgtgagtatgagagagaaagttatc-aaaaagttgtcagaaagtggttgtacaaatatcatttctct 19376204  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26791258 - 26791316
Alignment:
Q  8 atgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||||||| |||||| ||| ||||||||| | ||||| |||| ||||||||||||||||    
T  26791258 atgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatattatttctct 26791316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1079959 - 1080024
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||||||||||||| |||||| ||| |||| |||| | |||| ||||| ||||||| ||||||||    
T  1079959 tgtgaatatgagagagaaagttgtcacaaaaattgtaaaaaataattgttcaaatatcatttctct 1080024  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1274422 - 1274357
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    ||||| ||||| ||| |||||| ||| ||||||||||| ||||| |||| ||||||| ||||||||    
T  1274422 tgtgagtatgaaagataaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctct 1274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4719715 - 4719650
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| |||||||||||| ||| ||| ||||||||||| ||| || |||||||||||| |||||||    
T  4719715 tgtgagtatgagagaaaaggttgtcacaaaagttgtcaaaaattggttgtacaaatatcatttctc 4719650  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8920143 - 8920074
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctctata 69  Q
    ||||| ||||||||| |||||| ||| |||||||||||| |||||  ||| ||||||| |||||||||||    
T  8920143 tgtgagtatgagagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctctata 8920074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12779613 - 12779677
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| |||||| |||||||||||| || |||||||||||| |||||||    
T  12779613 tgtgagtatgagagataaagttgtcaaaa-agttgtcacaaattggttgtacaaatatcatttctc 12779677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15639449 - 15639385
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcac-aaatgattgtacaaatattatttctc 65  Q
    ||||| |||||||||||||||| || |||| |||||||| ||||| |||||||||||| |||||||    
T  15639449 tgtgagtatgagagaaaaagttgtctaaaa-gttgtcaccaaatggttgtacaaatatcatttctc 15639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34381076 - 34381012
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| |||||||    
T  34381076 tgtgagtatgagagagaaagttgtcaaaaa-gttgtcacaaagtggttgtacaaatatcatttctc 34381012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40223792 - 40223856
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    ||||| ||||||||| |||||| |||||| |||||||||||| || |||||||||||| |||||||    
T  40223792 tgtgagtatgagagagaaagttgtcaaaa-agttgtcacaaagtggttgtacaaatataatttctc 40223856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 18660822 - 18660758
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaatgattgtacaaatattatttctct 66  Q
    |||| ||||||||| ||| || ||| ||||||||||| ||||| |||| ||||||| ||||||||    
T  18660822 gtgagtatgagagagaaaattgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctct 18660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 39595335 - 39595272
Alignment:
Q  2 gtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctc 65  Q
    |||| ||||||||| |||||| ||||||| ||||||||||| || |||||||||||| |||||||    
T  39595335 gtgagtatgagagagaaagttgtcaaaaa-gttgtcacaaagtggttgtacaaatatcatttctc 39595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10742 - 10809
Alignment:
Q  1 tgtgaatatgagagaaaaagttatcaaaaaagttgtcacaaa-tgattgtacaaatattatttctctat 68  Q
    ||||| |||||||||||||||| |||||||| |||| | ||| || |||||||||||| ||||||||||    
T  10742 tgtgagtatgagagaaaaagttgtcaaaaaa-ttgtaataaagtggttgtacaaatatcatttctctat 10809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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