View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_low_13 (Length: 236)
Name: NF4505_low_13
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52485877 - 52486106
Alignment:
| Q |
1 |
tatgctcttcttcatcttgctggttatgacagtgtccaggttactcttttttctctttcatttcattaatcactgtttt--------ttactctttaatt |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52485877 |
tatgctcttcttcatcttgctggttatgacagtgtccaggttactcttttttctctttcatttcattaatcactgttttatttttttttactctttaatt |
52485976 |
T |
|
| Q |
93 |
aaactcgtaggattaaccaatcaaattttatttttctaatactttaatctttaaattaaccaaatttcaaaatactatattaaaattgaaaatctgtaac |
192 |
Q |
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||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52485977 |
aaactcgtaggattaaccaataaaatttaatttttctattactttaatctttaaattaaccaaatttcaaaatagtatattaaaattgaaaatctgtaac |
52486076 |
T |
|
| Q |
193 |
agagttcaaatcccgacaaaggagataaat |
222 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52486077 |
agagttcaaatcccgacaaaggagataaat |
52486106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24644899 - 24644669
Alignment:
| Q |
1 |
tatgctcttcttcatcttgctggttatgacagtgtccaggttactcttttttctctttcatttcattaatcactgttttt---------tactctttaat |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24644899 |
tatgctcttcttcatcttgctggttatgacagtgtccaggttactcttttttctctttcatttcattaatcactgtttttatttttttttactctttaat |
24644800 |
T |
|
| Q |
92 |
taaactcgtaggattaaccaatcaaattttatttttctaatactttaatctttaaattaaccaaatttcaaaatactatattaaaattgaaaatctgtaa |
191 |
Q |
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|
|||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24644799 |
taaactcgtaggattaaccaataaaatttaatttttctattactttaatctttaaattaaccaaatttcaaaatagtatattaaaattgaaaatctgtaa |
24644700 |
T |
|
| Q |
192 |
cagagttcaaatcccgacaaaggagataaat |
222 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
24644699 |
cagagttcaaatcccgacaaaggagataaat |
24644669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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