View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4505_low_16 (Length: 222)
Name: NF4505_low_16
Description: NF4505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4505_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 10599099 - 10599293
Alignment:
| Q |
9 |
caatgagatgaacaataacgaagaagcactaactcnnnnnnnnntcgacaatataattatacttcaaggtggatatttcatgaaacataatcaaaaaatc |
108 |
Q |
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| T |
10599099 |
caatgaaatgaacaataacgaagaagcactaactcaaaaaaaa-tcgacaata--attatactttaaggtggatatttcatgaaacataataaaaaaatc |
10599195 |
T |
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| Q |
109 |
tcattcacactacttgccaagtctgataaataagtttgattaaaagttcaaaaaacttaaaactaacatagaaatattaaaactattatagaacttat |
206 |
Q |
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| T |
10599196 |
tcattcacactacttgccaagtctgataaataagtttgattaaaagttcaaaaaacttaaaactaacataaaaatattaaaactattatagaacttat |
10599293 |
T |
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Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6255151 - 6254957
Alignment:
| Q |
9 |
caatgagatgaacaataacgaagaagcactaactcnnnnnnnnntcgacaatataattatacttcaaggtggatatttcatgaaacataatcaaaaaatc |
108 |
Q |
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|||||| |||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
6255151 |
caatgaaatgaacaataacgaagaagcactaacgcaaaaaag--tcgacaata--attatactttaaggtggatatttcatgaaacataatcaaaatatc |
6255056 |
T |
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| Q |
109 |
tcattcacactacttgccaagtctgataaataagtttgattaaaagttcaaaaaac-ttaaaactaacatagaaatattaaaactattatagaacttat |
206 |
Q |
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||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6255055 |
tcattcagactacttgccaagtctgatacataagcttgattaaaagttcaaaaaactttaaaactaacatagaaatattaaaactattatagaacttat |
6254957 |
T |
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